Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0946 ATGCCTTCTCTCGCCCTCCTCTGCATTTTTGCCTCTCTCTCTTCACTCTTCCTCCTCTCTCATGCCAGAATCCCCGGTATCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGAAGCGACGCCTCCGGAACCATGGGTCTGTCTCTACTTTTCCTACTTTCCCTCTTTCTTATACCACATTTTCTTGATCCGGGTTTGTTTTTTTTTACAGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACGGCCGCGCTGAGTACTGCTCTGTTCAACAATGGCTTTAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCTAATGATCCCAAATGGTGCCATCCGGGTAGCCCTTCCATTTTCATTACGGCTACCAATTTCTGTCCCCCGAATTTTGCTCTTCCTAACGACAATGGCGGCTGGTGTAATCCTCCTCGCACTCATTTCGATCTCGCCATGCCTATGTTCCTCAAGATCGCCGAATACCGCGCTGGAATCGTCCCCGTCGCTTACCGCCGGGTGCCATGTAAGAAACAAGGGGGAATCCGGTTCACAATAAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCTCAAACACCGGCTGGATGAGCATGAGCCGAAACTGGGGGCAAAATTGGCAATCCAATGCGGTTTTGGTGGGCCAGTCCCTCTCCTTCCGGGTCACGGGCAGTGACCGTCGTACGTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTCTGA 855 53.22 MPSLALLCIFASLSSLFLLSHARIPGIYSGGPWQDAHATFYGGSDASGTMGLSLLFLLSLFLIPHFLDPGLFFFTGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVPCKKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 65909605 65911671 + Tan0014057.2 Tan03g0946 746450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0946 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Tan03g0946 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 76 190 IPR007112 -
Tan03g0946 284 FunFam Expansin 190 282 - -
Tan03g0946 284 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Tan03g0946 284 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576(InterPro)
Tan03g0946 284 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Tan03g0946 284 SMART dpbb_1 93 180 IPR007112 -
Tan03g0946 284 CDD DPBB_EXPA_N 32 185 - -
Tan03g0946 284 PANTHER EXPANSIN-A15 15 282 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 Pfam Lytic transglycolase 93 180 IPR009009 -
Tan03g0946 284 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Tan03g0946 284 Gene3D - 190 282 IPR036749 -
Tan03g0946 284 PRINTS Expansin signature 165 178 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 201 222 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 88 102 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 129 139 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 148 165 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 115 126 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 236 257 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 189 201 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 PRINTS Expansin signature 265 281 IPR002963 GO:0009664(InterPro)
Tan03g0946 284 Gene3D - 22 186 IPR036908 -
Tan03g0946 284 SUPERFAMILY Barwin-like endoglucanases 32 208 IPR036908 -
Tan03g0946 284 Pfam Expansin C-terminal domain 191 268 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2437 Tan-Chr1:30691827 Tan03g0946 Tan-Chr3:65909605 5.70E-130 dispersed
Tan03g0946 Tan-Chr3:65909605 Tan05g0412 Tan-Chr5:2890306 1.20E-136 dispersed
Tan03g0945 Tan-Chr3:65909605 Tan03g0946 Tan-Chr3:65909605 3.10E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0946 - - - 0.0