Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0957 ATGGCCGAGAACGAGGATATTCAGCCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTCGAAACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGCCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAGATCTTGACCGAGCGTGGTTATTCATTCACCACCACAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTATGAGCAAGAATTGGAAACCTCAAAGACCAGCTCTTCCGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTAGCTCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAGTGCTTCTAA 1134 48.15 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66011105 66013944 - Tan0019403.1 Tan03g0957 746461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0957 377 FunFam Major actin 260 340 - -
Tan03g0957 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Tan03g0957 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan03g0957 377 PRINTS Actin signature 51 62 IPR004000 -
Tan03g0957 377 PRINTS Actin signature 238 254 IPR004000 -
Tan03g0957 377 PRINTS Actin signature 63 85 IPR004000 -
Tan03g0957 377 PRINTS Actin signature 142 161 IPR004000 -
Tan03g0957 377 PRINTS Actin signature 28 37 IPR004000 -
Tan03g0957 377 PRINTS Actin signature 117 130 IPR004000 -
Tan03g0957 377 FunFam Putative actin-related protein 5 341 369 - -
Tan03g0957 377 Gene3D - 140 340 - -
Tan03g0957 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan03g0957 377 FunFam Actin, muscle 182 273 - -
Tan03g0957 377 Pfam Actin 5 377 IPR004000 -
Tan03g0957 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tan03g0957 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Tan03g0957 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan03g0957 377 Gene3D - 10 371 - -
Tan03g0957 377 SMART actin_3 7 377 IPR004000 -
Tan03g0957 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Tan03g0957 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan03g0957 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0957 Tan-Chr3:66011105 Tan04g0301 Tan-Chr4:2452256 5.70E-216 dispersed
Tan08g1503 Tan-Chr8:62355528 Tan03g0957 Tan-Chr3:66011105 5.20E-217 transposed
Tan11g0716 Tan-Chr11:6154362 Tan03g0957 Tan-Chr3:66011105 1.40E-214 wgd
Tan03g0957 Tan-Chr3:66011105 Tan05g0383 Tan-Chr5:2796238 5.20E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0957 K10355 - csv:101214246 749.584