Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0966 ATGGTATTTCCCTCCATCCCATCTTATCTTGATCCAACAACCCATCCATGGCAACAGCAGCAGCAACAGCAAACAGGAAGCCATCAATCCGGCAGTATCATCGGAGGTGGCAGTTTTCAGCTCGTGTCGCCGCCGCGGGCTCAGCCACAAGTGCGACCCGGATCGATGTTGGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGATTCTACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAACCGCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGATACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAATCTACTACTTCTGCTGCAGCTGGAGAAGTAATGAGATTAAATTACAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAAGTCATCCCATTGAGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGTCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCAGCTCGGTTGCTCGGAAATAATAGCATCGACGCAACTTCGAGCTACAACATCGTCGGGCAGATTCAGAAGAAGATGGAGACGACGAAAATGGAGGAAGATGGGCAACAACAGGTTAATGTGGGGAAGCCATTTTTGGGAGTTGTTGCAGGGAGTGATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAAATATGA 825 50.06 MVFPSIPSYLDPTTHPWQQQQQQQTGSHQSGSIIGGGSFQLVSPPRAQPQVRPGSMLDRARMANLPVPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQSTTSAAAGEVMRLNYNAISTPNEGAGDSSHPIEIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNSIDATSSYNIVGQIQKKMETTKMEEDGQQQVNVGKPFLGVVAGSDRHYWSGFNPSSSSHSQI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66106338 66108168 - Tan0020276.1 Tan03g0966 746470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0966 274 MobiDBLite consensus disorder prediction 11 37 - -
Tan03g0966 274 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g0966 274 MobiDBLite consensus disorder prediction 11 52 - -
Tan03g0966 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g0966 274 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g0966 274 MobiDBLite consensus disorder prediction 117 143 - -
Tan03g0966 274 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0966 Tan-Chr3:66106338 Tan03g2490 Tan-Chr3:78319311 4.30E-27 dispersed
Tan03g0966 Tan-Chr3:66106338 Tan03g0967 Tan-Chr3:66106338 1.40E-155 tandem
Tan01g2463 Tan-Chr1:31500586 Tan03g0966 Tan-Chr3:66106338 2.20E-38 wgd
Tan11g0734 Tan-Chr11:6262569 Tan03g0966 Tan-Chr3:66106338 3.80E-36 wgd
Tan03g0966 Tan-Chr3:66106338 Tan04g0300 Tan-Chr4:2442933 3.20E-38 wgd
Tan03g0966 Tan-Chr3:66106338 Tan05g0376 Tan-Chr5:2744196 1.60E-37 wgd
Tan03g0966 Tan-Chr3:66106338 Tan08g1993 Tan-Chr8:72042638 2.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26928 PF02701 zf-Dof 3.00E-31 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0966 - - - 0.0