Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g0967 | ATGGTATTTCCCTCCATCCCATCTTATCTTGATCCAACAACCCATCCATGGCAACAGCAGCAGCAACAGCAAACAGGAAGCCATCAATCCGGCAGTATCATCGGAGGTGGCAGTTTTCAGCTCGTGTCGCCGCCGCGGGCTCAGCCACAAGTGCGACCCGGATCGATGTTGGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGATTCTACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAACCGCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGATACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAATCTACTACTTCTGCTGCAGCTGAGCTTTCAGCAGGAGAAGTAATGAGATTAAATTACAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAAGTCATCCCATTGAGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGTCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCAGCTCGGTTGCTCGGAAATAATAGCATCGACGCAACTTCGAGCTACAACATCGTCGGGCAGATTCAGAAGAAGATGGAGACGACGAAAATGGAGGAAGATGGGCAACAACAGGTTAATGTGGGGAAGCCATTTTTGGGAGTTGTTGCAGGGAGTGATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAAATATGA | 837 | 50.06 | MVFPSIPSYLDPTTHPWQQQQQQQTGSHQSGSIIGGGSFQLVSPPRAQPQVRPGSMLDRARMANLPVPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQSTTSAAAELSAGEVMRLNYNAISTPNEGAGDSSHPIEIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNSIDATSSYNIVGQIQKKMETTKMEEDGQQQVNVGKPFLGVVAGSDRHYWSGFNPSSSSHSQI | 278 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 66106338 | 66108168 | - | Tan0020276.2 | Tan03g0967 | 746471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g0967 | 278 | MobiDBLite | consensus disorder prediction | 11 | 37 | - | - | |
| Tan03g0967 | 278 | ProSitePatterns | Zinc finger Dof-type signature. | 74 | 110 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Tan03g0967 | 278 | Pfam | Dof domain, zinc finger | 71 | 126 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Tan03g0967 | 278 | MobiDBLite | consensus disorder prediction | 11 | 52 | - | - | |
| Tan03g0967 | 278 | MobiDBLite | consensus disorder prediction | 117 | 142 | - | - | |
| Tan03g0967 | 278 | ProSiteProfiles | Zinc finger Dof-type profile. | 72 | 126 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Tan03g0967 | 278 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 53 | 204 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g0967 | Tan-Chr3:66106338 | Tan08g1993 | Tan-Chr8:72042638 | 1.50E-43 | dispersed | |
| Tan03g0966 | Tan-Chr3:66106338 | Tan03g0967 | Tan-Chr3:66106338 | 1.40E-155 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26929 | PF02701 | zf-Dof | 3.10E-31 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g0967 | - | - | - | 0.0 |