Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g0967 ATGGTATTTCCCTCCATCCCATCTTATCTTGATCCAACAACCCATCCATGGCAACAGCAGCAGCAACAGCAAACAGGAAGCCATCAATCCGGCAGTATCATCGGAGGTGGCAGTTTTCAGCTCGTGTCGCCGCCGCGGGCTCAGCCACAAGTGCGACCCGGATCGATGTTGGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGATTCTACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAACCGCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGATACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAATCTACTACTTCTGCTGCAGCTGAGCTTTCAGCAGGAGAAGTAATGAGATTAAATTACAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAAGTCATCCCATTGAGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGTCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCAGCTCGGTTGCTCGGAAATAATAGCATCGACGCAACTTCGAGCTACAACATCGTCGGGCAGATTCAGAAGAAGATGGAGACGACGAAAATGGAGGAAGATGGGCAACAACAGGTTAATGTGGGGAAGCCATTTTTGGGAGTTGTTGCAGGGAGTGATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAAATATGA 837 50.06 MVFPSIPSYLDPTTHPWQQQQQQQTGSHQSGSIIGGGSFQLVSPPRAQPQVRPGSMLDRARMANLPVPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQSTTSAAAELSAGEVMRLNYNAISTPNEGAGDSSHPIEIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNSIDATSSYNIVGQIQKKMETTKMEEDGQQQVNVGKPFLGVVAGSDRHYWSGFNPSSSSHSQI 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66106338 66108168 - Tan0020276.2 Tan03g0967 746471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g0967 278 MobiDBLite consensus disorder prediction 11 37 - -
Tan03g0967 278 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g0967 278 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g0967 278 MobiDBLite consensus disorder prediction 11 52 - -
Tan03g0967 278 MobiDBLite consensus disorder prediction 117 142 - -
Tan03g0967 278 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g0967 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 204 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g0967 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0967 Tan-Chr3:66106338 Tan08g1993 Tan-Chr8:72042638 1.50E-43 dispersed
Tan03g0966 Tan-Chr3:66106338 Tan03g0967 Tan-Chr3:66106338 1.40E-155 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT1G29160 54.4 3.7e-40 162.2
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT1G29160 52.6 6.3e-40 161.4
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-40 163.7
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-36 150.6
Tan11g0734 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.2e-38 157.1
Tan09g2117 . 33 384 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.9e-88 323.9
Tan01g2463 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.4e-39 161.4
Tan03g0966 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0967 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0966 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan03g0967 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan09g2004 . 24 317 C2C2-Dof Transcription Factor Family AT5G60850 52.8 2.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26929 PF02701 zf-Dof 3.10E-31 No_clan Tan TF