Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1001 ATGGGAAACGCCCATGGCCACCGCAAGCCTTTCAACCATGGCGTAAATACCTCTCGACCCACGAACGCTCATTCTCCCTCCAATAAATATACCCCATCTGGACCTGCTTCTCAAAGTTCGACCTCGACGGCGAATATGGAATCCTTGCCCTACGCCCTTGTTGATTCGAGCCTTCGAGCCCTCGCCGGTCAGGCCGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGCGTCACTAATTTGGAAGATGATGGTCCAGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTTCATATCTGAATGTGTCATCTTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAGTTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTTCGAGACTATGATGATGGTTTGATTGATATCACCCGGGGAAGCACGGATATCACTATTTCTAGGTGCCACTTCTCACAGCATGATAAGACAATGCTCATTGGAGCAGATCCCTCTCACGTTGGGGACCGATGTATTCGTGTCACTATCCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGTGTTAGATACGGTCAAGTACATCTTTACAATAATTACACTAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCAAAGATATATTCTCAGTGCAACATATACGAAGCGGGGCAGAAAAAGGTGGCATTCAAATACCTAACTGAAAAGGCAACAGACAAGGAAGAGCCTTCAAGTGGGTGCATATGGTCTGATGGAGATTTATTTGTAAGTGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGCTGGACAAGACTTGTTTCATCCTTCTCAACATTACACTGCTTGGACTGTGGAACCTCCAACAGATGCTCTGAAACATATTCTCCAACATTGTACTGGTTGCCAAAACATCCCAAGGCCCACTGATCTGTCATTGGTTCCTTAG 1134 45.5 MGNAHGHRKPFNHGVNTSRPTNAHSPSNKYTPSGPASQSSTSTANMESLPYALVDSSLRALAGQAEGFGRSAIGGLHGSVYCVTNLEDDGPGSLRFGCRMKEPLWIIFEVSGTIHLSSYLNVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYGQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGQKKVAFKYLTEKATDKEEPSSGCIWSDGDLFVSGTQSGLLAATAAGQDLFHPSQHYTAWTVEPPTDALKHILQHCTGCQNIPRPTDLSLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66420137 66423683 - Tan0012491.1 Tan03g1001 746505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1001 377 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Tan03g1001 377 PRINTS Pollen allergen Amb family signature 244 263 IPR018082 -
Tan03g1001 377 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Tan03g1001 377 Pfam Pectate lyase 120 281 IPR002022 -
Tan03g1001 377 Gene3D - 52 355 IPR012334 -
Tan03g1001 377 SMART amb_all 76 289 IPR002022 -
Tan03g1001 377 MobiDBLite consensus disorder prediction 1 44 - -
Tan03g1001 377 PANTHER PECTATE LYASE 18-RELATED 57 348 IPR045032 GO:0030570(InterPro)
Tan03g1001 377 MobiDBLite consensus disorder prediction 14 44 - -
Tan03g1001 377 SUPERFAMILY Pectin lyase-like 62 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1001 Tan-Chr3:66420137 Tan05g3352 Tan-Chr5:85315597 4.30E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1001 K01728 - csv:101219724 697.197