Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1036 ATGTTGGACCTCAATCTCTATATTCTCTCCGGAGATTCCGCTTCCGGTTCCGCCGATTTAAATCCCTTCAATCTTTCCGGTGCCGGAGTTGACAGTCCCATTTCTTCCTCCGTCGTCAACGCCGATCATTCCAACACCACCGCCGACGAGGACTCCTCTTCCAACGCCGATTGTGGTTTCACTTTCTCTTTCAGCATCCTCAACAACAGTAATGACGATCAACGCGACCGGACGGCCCGGTTTCCCCCCGTCGCCGGCGTCTGTTCATGGCTGGATTCTGATTTTGTTAGAGCCACTAATAGAATCGTGGTTCAACAGTCCGTTCATCCGGTGAAGAAGGGCCGACGAGGCCCCAAATCGAGGAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGAGGTTTTGACACAGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATCAAGTTTCGAGGGGTTGATGCTGATATAAACTTCAACATCAGCGAGTACAGTGAAGAGATTAAACAGATGAGTAATTTCAGTAAAGAGGAATTTGTGCATATTCTTCGACGGCAGAGCACTGGATTTTCAAGAGGGAGTTCCAAATACAGAGGGGTTACTTTGCATAAATGTGGGCGATGGGAGGCTCGTATGGGCCAGTTTTTGGGGAAAAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCAATAAAATACAATGGAAGGGAAGCTGTTACTAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTGAAAAACAAGATATGGGTGATATTGACTTGAACTTGGGTATTGCTCCTCCTTGTCCATCTGAAGACCAAAGAGACAACCTTAATGGCTGTCCTCCAAATTTCTGTGGATTAAAAGAATCAGAGACTGAGAGATCTGGGGTGATGCTTGAAAATCATGCTTCTGTGGCTGTGAGAGCACACCCTTCTTTAATGAGTTGTGCCAATTTTTTCCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATGGAAGTTGAATCCTTACCAAAGTGGGGTTGGCAGATCCCAAGCCCCTACGGCGGAGCAACTTCAGTCCCTTCCTTCTCCGCTGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCGCCGTTCCTCCGCCCTTGCCCTTGCCCCACCATCTTCATCCAGCGGCGCCGCCCTTCCTCCGCCACCACATTCCGCCCTCTATTCCCGCCGGCAACAGCCTACCTTTACCTTATTTCTACTGCAGGACCTGA 1347 48.7 MLDLNLYILSGDSASGSADLNPFNLSGAGVDSPISSSVVNADHSNTTADEDSSSNADCGFTFSFSILNNSNDDQRDRTARFPPVAGVCSWLDSDFVRATNRIVVQQSVHPVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNISEYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESEKQDMGDIDLNLGIAPPCPSEDQRDNLNGCPPNFCGLKESETERSGVMLENHASVAVRAHPSLMSCANFFPTYQERAMEKRMEVESLPKWGWQIPSPYGGATSVPSFSAAASSGFPSSPAAVPPPLPLPHHLHPAAPPFLRHHIPPSIPAGNSLPLPYFYCRT 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66676086 66681575 + Tan0017334.1 Tan03g1036 746540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1036 448 ProSiteProfiles AP2/ERF domain profile. 216 273 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 FunFam AP2-like ethylene-responsive transcription factor 215 275 - -
Tan03g1036 448 CDD AP2 123 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 ProSiteProfiles AP2/ERF domain profile. 124 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 FunFam AP2-like ethylene-responsive transcription factor 123 182 - -
Tan03g1036 448 SUPERFAMILY DNA-binding domain 215 274 IPR016177 GO:0003677(InterPro)
Tan03g1036 448 Pfam AP2 domain 124 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 Pfam AP2 domain 215 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 SMART rav1_2 124 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 SMART rav1_2 216 279 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 308 - -
Tan03g1036 448 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677(InterPro)
Tan03g1036 448 PRINTS Ethylene responsive element binding protein signature 217 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 PRINTS Ethylene responsive element binding protein signature 255 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 Gene3D AP2/ERF domain 215 274 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1036 448 CDD AP2 215 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1036 Tan-Chr3:66676086 Tan05g0303 Tan-Chr5:2284898 1.10E-104 dispersed
Tan03g1036 Tan-Chr3:66676086 Tan08g1929 Tan-Chr8:71547037 7.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26935 PF00847 AP2 1.50E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1036 K09284 - csv:101211008 661.373