Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g1036 | ATGTTGGACCTCAATCTCTATATTCTCTCCGGAGATTCCGCTTCCGGTTCCGCCGATTTAAATCCCTTCAATCTTTCCGGTGCCGGAGTTGACAGTCCCATTTCTTCCTCCGTCGTCAACGCCGATCATTCCAACACCACCGCCGACGAGGACTCCTCTTCCAACGCCGATTGTGGTTTCACTTTCTCTTTCAGCATCCTCAACAACAGTAATGACGATCAACGCGACCGGACGGCCCGGTTTCCCCCCGTCGCCGGCGTCTGTTCATGGCTGGATTCTGATTTTGTTAGAGCCACTAATAGAATCGTGGTTCAACAGTCCGTTCATCCGGTGAAGAAGGGCCGACGAGGCCCCAAATCGAGGAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGAGGTTTTGACACAGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATCAAGTTTCGAGGGGTTGATGCTGATATAAACTTCAACATCAGCGAGTACAGTGAAGAGATTAAACAGATGAGTAATTTCAGTAAAGAGGAATTTGTGCATATTCTTCGACGGCAGAGCACTGGATTTTCAAGAGGGAGTTCCAAATACAGAGGGGTTACTTTGCATAAATGTGGGCGATGGGAGGCTCGTATGGGCCAGTTTTTGGGGAAAAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCAATAAAATACAATGGAAGGGAAGCTGTTACTAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTGAAAAACAAGATATGGGTGATATTGACTTGAACTTGGGTATTGCTCCTCCTTGTCCATCTGAAGACCAAAGAGACAACCTTAATGGCTGTCCTCCAAATTTCTGTGGATTAAAAGAATCAGAGACTGAGAGATCTGGGGTGATGCTTGAAAATCATGCTTCTGTGGCTGTGAGAGCACACCCTTCTTTAATGAGTTGTGCCAATTTTTTCCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATGGAAGTTGAATCCTTACCAAAGTGGGGTTGGCAGATCCCAAGCCCCTACGGCGGAGCAACTTCAGTCCCTTCCTTCTCCGCTGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCGCCGTTCCTCCGCCCTTGCCCTTGCCCCACCATCTTCATCCAGCGGCGCCGCCCTTCCTCCGCCACCACATTCCGCCCTCTATTCCCGCCGGCAACAGCCTACCTTTACCTTATTTCTACTGCAGGACCTGA | 1347 | 48.7 | MLDLNLYILSGDSASGSADLNPFNLSGAGVDSPISSSVVNADHSNTTADEDSSSNADCGFTFSFSILNNSNDDQRDRTARFPPVAGVCSWLDSDFVRATNRIVVQQSVHPVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNISEYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESEKQDMGDIDLNLGIAPPCPSEDQRDNLNGCPPNFCGLKESETERSGVMLENHASVAVRAHPSLMSCANFFPTYQERAMEKRMEVESLPKWGWQIPSPYGGATSVPSFSAAASSGFPSSPAAVPPPLPLPHHLHPAAPPFLRHHIPPSIPAGNSLPLPYFYCRT | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 66676086 | 66681575 | + | Tan0017334.1 | Tan03g1036 | 746540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g1036 | 448 | ProSiteProfiles | AP2/ERF domain profile. | 216 | 273 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | FunFam | AP2-like ethylene-responsive transcription factor | 215 | 275 | - | - | |
Tan03g1036 | 448 | CDD | AP2 | 123 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | ProSiteProfiles | AP2/ERF domain profile. | 124 | 180 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | FunFam | AP2-like ethylene-responsive transcription factor | 123 | 182 | - | - | |
Tan03g1036 | 448 | SUPERFAMILY | DNA-binding domain | 215 | 274 | IPR016177 | GO:0003677(InterPro) | |
Tan03g1036 | 448 | Pfam | AP2 domain | 124 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | Pfam | AP2 domain | 215 | 265 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | SMART | rav1_2 | 124 | 186 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | SMART | rav1_2 | 216 | 279 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 65 | 308 | - | - | |
Tan03g1036 | 448 | SUPERFAMILY | DNA-binding domain | 123 | 182 | IPR016177 | GO:0003677(InterPro) | |
Tan03g1036 | 448 | PRINTS | Ethylene responsive element binding protein signature | 217 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | PRINTS | Ethylene responsive element binding protein signature | 255 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | Gene3D | AP2/ERF domain | 215 | 274 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | Gene3D | AP2/ERF domain | 123 | 182 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g1036 | 448 | CDD | AP2 | 215 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1036 | Tan-Chr3:66676086 | Tan05g0303 | Tan-Chr5:2284898 | 1.10E-104 | dispersed | |
Tan03g1036 | Tan-Chr3:66676086 | Tan08g1929 | Tan-Chr8:71547037 | 7.00E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26935 | PF00847 | AP2 | 1.50E-10 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g1036 | K09284 | - | csv:101211008 | 661.373 |