Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1047 ATGATGTCTGGTATTGACTTTTCTGTTCCTTCTTCTGTTGGTGAGTTTGTTCCTCTACAAAGTTCTCAGCTTTATGATCATATTATTCCTCATAACCCTAACCCTAACCCTAATCCAAATCCTAATCCTGATTCTTCTTCTCTCCCCAAGAAGAAGAGAAGTTTGCCAGGAAAACCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCAAACAGTCTGATGGCCACAAACAGATTCATTTGTGAGATTTGCAACAAAGGGTTCCAAAGGGACCAAAACTTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAGGCAGAGAAGCAACAAAGAAGTGGTGAAGAAGAAGGTTTATATTTGCCCTGAGAAGTCTTGTGTTCATCATGATCCAGCCAGAGCCCTTGGAGACTTGACTGGAATTAAAAAGCACTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACTTGTGGAACTCGAGAGTACAAGTGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGTTTCATAACTCACAGAGCATTCTGCGACGCTCTAGCAGAAGAAAGTGCAAGGCTAATCTCATCCGTAAGAGCAGCAAATTCAAAACCAAATTTCATTGGCAATATTTCACTCAACGAATCTCTGTTGTTCAATAATAATAATTCCCATTCCCAGCAGTACTTCAATAATCTCTCGAATCCCAATCCCAATTCCCAAGGCGAAATCTTTGTCCAATCAGACCATAATAATCCCATCAACAACTTCCCTAATTTCCCCCAAATTCCACCCTCTAATCTCTTCGAAATCTCAAACCGAATTCTGGGTTTGAACAAGAACTCTTCAAAAACAGCCGTGAGCCTCTCGTCGTTCTGCTCTGGCGGTGGAGGAGGGAAGGCGATTATGCCGATGTCGGCGACGGCGCTTCTGCTGAAGGCGGCGCAATTGGGGTCTACGAAAAGTAATCCGTCGTTGTCCGGGAACAGTGTGGGAGTTATGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGTTGCAGAGAATGTTTGAGAGTACTGGTGATGGGAAGAAGGTGGTGGTGGAGCAGGGCTCCAATGGCGGAAAGGGGAGTGGGTTGAGGGATTTTCTTGGGACGGGGGAGAGAGATGGGATTGGAATTGGGAATGTGGAGTTGGTTCCATTAATGGAGCTGACGAAATTTGGAAGCTCGGAGATGGGGTTGAGCCAATTCATTGGGAATATAATTAATGATCCACGATGA 1323 44.44 MMSGIDFSVPSSVGEFVPLQSSQLYDHIIPHNPNPNPNPNPNPDSSSLPKKKRSLPGKPDPDAEVIALSPNSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLISSVRAANSKPNFIGNISLNESLLFNNNNSHSQQYFNNLSNPNPNSQGEIFVQSDHNNPINNFPNFPQIPPSNLFEISNRILGLNKNSSKTAVSLSSFCSGGGGGKAIMPMSATALLLKAAQLGSTKSNPSLSGNSVGVMSSFDQSKGELQLQRMFESTGDGKKVVVEQGSNGGKGSGLRDFLGTGERDGIGIGNVELVPLMELTKFGSSEMGLSQFIGNIINDPR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66769510 66773004 + Tan0001350.1 Tan03g1047 746551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1047 440 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 182 219 - -
Tan03g1047 440 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 155 179 - -
Tan03g1047 440 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Tan03g1047 440 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 117 151 - -
Tan03g1047 440 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Tan03g1047 440 SMART c2h2final6 121 151 IPR013087 -
Tan03g1047 440 SMART c2h2final6 156 176 IPR013087 -
Tan03g1047 440 SMART c2h2final6 79 101 IPR013087 -
Tan03g1047 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Tan03g1047 440 Gene3D Classic Zinc Finger 60 132 - -
Tan03g1047 440 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Tan03g1047 440 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Tan03g1047 440 FunFam protein indeterminate-domain 12-like 58 127 - -
Tan03g1047 440 MobiDBLite consensus disorder prediction 26 63 - -
Tan03g1047 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 357 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan03g1047 440 Gene3D Classic Zinc Finger 134 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2579 Tan-Chr1:38289580 Tan03g1047 Tan-Chr3:66769510 1.90E-93 dispersed
Tan01g2580 Tan-Chr1:38289580 Tan03g1047 Tan-Chr3:66769510 2.40E-84 dispersed
Tan03g1047 Tan-Chr3:66769510 Tan04g2759 Tan-Chr4:87095696 1.20E-87 dispersed
Tan09g0200 Tan-Chr9:11128365 Tan03g1047 Tan-Chr3:66769510 8.70E-83 transposed
Tan03g1047 Tan-Chr3:66769510 Tan08g1892 Tan-Chr8:71233370 4.40E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26937 PF12171 zf-C2H2_jaz 6.30E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1047 K25870 - csv:101221389 442.195