Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1055 ATGTCTAAGGATGTTGAAGCCGGAGGCGGTGGTGGGTTTCCCGCCGGCGACTACCTCGACCAGCCTCCAGCTCCGATGTTCGATGCCGACGAGCTTTTGCGGTGGTCGTTTTACAGAGCCGTCATCGCTGAGTTCATTGCCGCGCTTTTGTTTCTGTACGTCGGAGTTCTCACCGTGATTGGTAATCAGAGTCAGTCTGGCGGCGTCGGTGTTCTCGGTATCGCTTGGGCGTTCGGTGGCACCATTTTCGTTCTCGTTTACTGTACCGCCGGCATATCTGGAGGACATATTAATCCAGCGGTAACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTCAGAGCTGTACTGTACATAGCGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGCTGGTCAAGTCATTAAAGAAGGCTAACTTCCACGCCTTCGGCGGTGGAGCCACCGAGCTCGCCGACGGTTTCAGCCCCGGCGCCGGCCTCGCCGCCGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCGTGGTGAATTTGGCCACCATTCCGGTCACCGGCGCCGGTATTAACCCGGCTCGAAGCTTTGGCTCTGCAGTGATGTTCAACAAACACAAGGCTTGGGATAACCATTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATGTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTCAGATCCTTCAGGAGTTCTTCAATTTAA 834 53.6 MSKDVEAGGGGGFPAGDYLDQPPAPMFDADELLRWSFYRAVIAEFIAALLFLYVGVLTVIGNQSQSGGVGVLGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRAVLYIAAQCLGAICGCGLVKSLKKANFHAFGGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNKHKAWDNHWIFWVGPFIGAAMAAMYHEFVLRGGAAKTFRSFRSSSI 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66822569 66823999 - Tan0017798.1 Tan03g1055 746559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1055 277 Pfam Major intrinsic protein 32 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Tan03g1055 277 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 273 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1055 277 NCBIfam MIP family channel protein 43 256 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 FunFam Probable aquaporin PIP1-2 24 276 - -
Tan03g1055 277 SUPERFAMILY Aquaporin-like 31 262 IPR023271 -
Tan03g1055 277 CDD MIP 39 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1055 277 Gene3D Glycerol uptake facilitator protein. 24 277 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1055 Tan-Chr3:66822569 Tan03g1062 Tan-Chr3:66863529 3.00E-121 dispersed
Tan03g1055 Tan-Chr3:66822569 Tan03g1058 Tan-Chr3:66835122 6.30E-119 proximal
Tan05g1199 Tan-Chr5:11863147 Tan03g1055 Tan-Chr3:66822569 2.00E-15 transposed
Tan11g0853 Tan-Chr11:7002074 Tan03g1055 Tan-Chr3:66822569 9.10E-113 wgd
Tan03g1055 Tan-Chr3:66822569 Tan05g0256 Tan-Chr5:1952043 1.70E-108 wgd
Tan03g1055 Tan-Chr3:66822569 Tan08g1884 Tan-Chr8:71178168 2.40E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1055 K09872 - csv:101215842 497.278