Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1058 ATGGCCAAGGATTCTGAAGCCGGAGGTTTCGCCGCCAAGGACTACCACGACCCACCTCCGACCCCATTGATCGACGCCGAGGAGTTCACTCAGTGGTCATTCTACAGAGCCATCATCGCCGAGTTCATCGCCACGCTTCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAATAGCCAGTCCGACACCAAAAACGGCGGCGAAATCTGCGGCGGCGTCGGCATTCTCGGCATCGCGTGGGCCTTCGGTGGAATGATATTCGTTCTCGTCTACTGCACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGTTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGGGCCGTTTTGTACATGGTGGCTCAGTGTGTTGGTGCCATTTGTGGATGTGCGTTGGTCAAATCGTTTCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCTAATTCGCTCGCCGACGGTTACAGCACCGGCACCGGCTTAGCCGCTGAGATCATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTCTAGCACCACTGCCAATTGGGTTTGCCGTGTTCATGGTACACCTGGCCACCATTCCGGTCACCGGCACCGGTATTAACCCAGCTCGAAGCTTTGGTGCTGCGGTGGTCTACAACCGGAGCAAGCCCTGGAATGACCACTGGATTTTCTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCGTTTTATCACCAGTTCATTTTGAGAGCTGGAGCAGTGAAAGCTCTGGGATCGTTTAGGAGTACCCACAGCGTTTAA 855 53.92 MAKDSEAGGFAAKDYHDPPPTPLIDAEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYNSQSDTKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCVGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVYNRSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66835122 66836963 - Tan0022112.1 Tan03g1058 746562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1058 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1058 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Tan03g1058 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Tan03g1058 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1058 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Tan03g1058 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0671 Tan-Chr2:6242704 Tan03g1058 Tan-Chr3:66835122 1.00E-121 dispersed
Tan03g1058 Tan-Chr3:66835122 Tan03g1061 Tan-Chr3:66855131 9.20E-150 dispersed
Tan03g1055 Tan-Chr3:66822569 Tan03g1058 Tan-Chr3:66835122 6.30E-119 proximal
Tan03g1058 Tan-Chr3:66835122 Tan03g1059 Tan-Chr3:66846829 8.90E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1058 K09872 - csv:101214884 536.569