Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1060 ATGTCGAAGGATCTTGAAGCTGGAGGGCGAGGTGGGTTTAGCGCCAAGGATTACGAAGATCCGCCCCCTGCCCCATTGATCGACGCGCGGGAATTTGGTCAATGGTCGTTTTACAGAGCCATTATAGCCGAGTTCGTTGCTACCCTTTTGTTCTTGTATGTTACTGTTCTTACTGTGATTGGGTATAACGTCCAGAGTGATGTTAAGAATGGAGGGGAGATTTGCGGCGGCGTCGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATTTTTGTTCTCGTTTACTGCACCGCCGGTATTTCTGGCGGGCATATAAATCCGGCGGTGACGTTTGGGCTGTTTTTGGCTCGGAAGGTTTCGTTGGTGAGAGCCGTTTTGTACATGGCGGCTCAGAGTTTGGGCGCCATTTGTGGGTGTGCGTTGGTGAAGGCATTCCAAAATGCTCACTATAATGAGTACGGCGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCACTGGCACCGGATTGGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACTGTGTTTTCTGCTACCGACCCCAAGAGAAATGCCAGAGATTCCCATGTCCCAGTGTTGGCGCCACTTCCAATTGGGTTCGCTGTGTTCATGGTTCACTTGGCCACAATTCCCATCACGGGCACTGGCATCAACCCAGCTCGAAGCTTTGGCGCTGCGGTGGTTTTCAACAAATCCAAGCCATGGGATGATCAAGTATATATATGA 756 51.85 MSKDLEAGGRGGFSAKDYEDPPPAPLIDAREFGQWSFYRAIIAEFVATLLFLYVTVLTVIGYNVQSDVKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQSLGAICGCALVKAFQNAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQVYI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66846829 66848318 + Tan0001205.2 Tan03g1060 746564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1060 251 Gene3D Glycerol uptake facilitator protein. 24 251 IPR023271 -
Tan03g1060 251 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 249 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1060 251 Pfam Major intrinsic protein 33 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 CDD MIP 39 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 NCBIfam MIP family channel protein 43 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1060 251 FunFam Probable aquaporin PIP1-2 24 251 - -
Tan03g1060 251 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Tan03g1060 251 SUPERFAMILY Aquaporin-like 31 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1060 Tan-Chr3:66846829 Tan03g1062 Tan-Chr3:66863529 4.30E-127 dispersed
Tan03g1059 Tan-Chr3:66846829 Tan03g1060 Tan-Chr3:66846829 1.30E-140 tandem
Tan03g1060 Tan-Chr3:66846829 Tan03g1061 Tan-Chr3:66855131 2.30E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1060 K09872 - csv:101216085 465.307