Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1061 ATGTCTAAGGATCTCGAAGCTGGTGGGTTCGCTGCCAAGGACTACCAAGACCCACCTCCAACCCCACTGATCGACGCCGAGGAGTTCACTCAATGGTCATTTTACAGAGCCATCATCGCCGAGTTCGTTGCCACCCTTCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTATAGCAACCAATCCGACACCAAAAACGGCGGCGAAATCTGCGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCTGGAATTTCCGGAGGGCACATTAACCCAGCGGTGACTTTTGGGTTGTTTTTGGCCCGGAAAGTGTCTCTAGTTAGAGCAGTTCTTTACATGGCGGCTCAATGTTTGGGCGCCATATGTGGATGTGCGTTGGTGAAATCGTTCCAGAAGGCTCATTACAAGGAGTACGGCGGTGGAGCCAATTCCCTCGCGGATGGATACAGCACCGGCACCGGCTTGGCCGCTGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACTGACCCCAAGAGGAACGCTAGGGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGATTCGCGGTGTTTATGGTTCATTTAGCCACCATCCCGATCACTGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCTGTGATCTTTAACAAAGACAAGCAGTGGGATGACCAGTGGATCTTTTGGGTCGGACCCTTCATTGGAGCTGCCATTGCCGCAATTTATCACCAAATCATATTGAGGGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACCGCCGTTTAA 855 52.87 MSKDLEAGGFAAKDYQDPPPTPLIDAEEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDTKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQCLGAICGCALVKSFQKAHYKEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKQWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66855131 66856744 + Tan0012535.1 Tan03g1061 746565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1061 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Tan03g1061 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Tan03g1061 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Tan03g1061 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1061 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1061 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Tan03g1061 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0641 Tan-Chr3:61657830 Tan03g1061 Tan-Chr3:66855131 1.50E-12 dispersed
Tan03g1058 Tan-Chr3:66835122 Tan03g1061 Tan-Chr3:66855131 9.20E-150 dispersed
Tan03g1059 Tan-Chr3:66846829 Tan03g1061 Tan-Chr3:66855131 3.90E-148 dispersed
Tan03g1061 Tan-Chr3:66855131 Tan03g1063 Tan-Chr3:66869326 1.10E-134 dispersed
Tan03g1060 Tan-Chr3:66846829 Tan03g1061 Tan-Chr3:66855131 2.30E-128 tandem
Tan03g1061 Tan-Chr3:66855131 Tan03g1062 Tan-Chr3:66863529 1.80E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1061 K09872 - csv:101215366 535.028