Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1062 ATGTCTAAGGATCTTGAAGCCGGTGGGTTCGCCGCCAAGGACTACCAAGACCTACCTCCAGCCCCACTGATCGACGCCGAGGAGTTCACTCAATGGTCATTTTACAGAGCCATCATCGCCGAGTTCGTTGCCACGCTTCTCTTCTTGTACGTCACTGTCCTCACTGTTATTGGCTATAGCAACCAATCCGACACCAAAAACGGCGGCCAAATATGCGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCTGGAATTTCCGGAGGGCATATTAACCCGGCAGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCTCTAGTTAGAGCAGTTCTATACATGACGGCTCAATGTTTGGGCGCCATTTGCGGGTGTGCGTTGGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCCCTCGCGGATGGATACAGCACCGGCACCGGCTTGGCCGCTGAGATCATCGGAACTTTCGTTCTTGTTTACACAGTCTTCTCTGCCACTGACCCCAAGAGGAACGCTAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATTGTTCATTTAGCCACCATCCCGATCACTGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCTGTGATCTTTAACAAAGACAAGCAGTGGGATGACCAGTGGATCTTTTGGGTCGGACCCTTCATTGGAGCTGCAATTGCCGCAATTTATCACCAAATCATATTGAGGGCTGGTGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACCGCTGTATAA 855 51.93 MSKDLEAGGFAAKDYQDLPPAPLIDAEEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMTAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIFNKDKQWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66863529 66865064 + Tan0013376.1 Tan03g1062 746566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1062 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1062 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1062 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Tan03g1062 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Tan03g1062 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Tan03g1062 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Tan03g1062 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1055 Tan-Chr3:66822569 Tan03g1062 Tan-Chr3:66863529 3.00E-121 dispersed
Tan03g1060 Tan-Chr3:66846829 Tan03g1062 Tan-Chr3:66863529 4.30E-127 dispersed
Tan03g1062 Tan-Chr3:66863529 Tan11g0853 Tan-Chr11:7002074 4.00E-129 dispersed
Tan03g1061 Tan-Chr3:66855131 Tan03g1062 Tan-Chr3:66863529 1.80E-158 tandem
Tan03g1062 Tan-Chr3:66863529 Tan03g1063 Tan-Chr3:66869326 2.10E-133 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1062 K09872 - csv:101215366 534.643