Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1063 ATGTCGGCCGCCAAGGACTACCAAGACCCGCCTCCAGCCCCATTAATCGACGCCGAGGAGCTCACTCAGTGGTCATTTTACAGAGCCATAATCGCCGAGTTCGTTGCCACGCTTTTGTTCTTGTACATTCTCGTTCTCACTGTGATTGGCTCTTCCAGGCTGTCCGACACCGAAAGCGGCGGTGAAATCTGCGGCGGTGTCGGCGTTTTGGGCATTGCCTGGGCAGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGAGGACATATTAACCCGGCGGTGACGTTCGGGCTGCTATTGGCTCGAAAAATCTCTCTAATCAGAGCTGTGTTTTACATTGTGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGGGTTGGCTAAATCATTTCAGAAGGCTTATTACGTTCGGTACAATGGTGGAGCCAATATGCTCTCTAATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAACGCTAGAGATTCTCACGTCCCTATTTTGGCGCCACTCCCGATTGGGTTTGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCTGCTCGAAGCTTAGGAGCTGCAGTGATCTTTAACAAAGCTGCCGCTTGGGATCATCACTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAGTCATAATAAGGGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCTCCGCCATATAA 831 51.26 MSAAKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYILVLTVIGSSRLSDTESGGEICGGVGVLGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLIRAVFYIVAQCLGAICGCGLAKSFQKAYYVRYNGGANMLSNEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKAAAWDHHWIFWVGPFIGAAIAAIYHQVIIRAGAVKALGSFRSSSAI 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66869326 66871708 + Tan0008382.1 Tan03g1063 746567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1063 276 FunFam Probable aquaporin PIP1-2 13 274 - -
Tan03g1063 276 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 272 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1063 276 Gene3D Glycerol uptake facilitator protein. 13 276 IPR023271 -
Tan03g1063 276 SUPERFAMILY Aquaporin-like 20 260 IPR023271 -
Tan03g1063 276 NCBIfam MIP family channel protein 32 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Tan03g1063 276 Pfam Major intrinsic protein 20 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1063 276 CDD MIP 28 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1061 Tan-Chr3:66855131 Tan03g1063 Tan-Chr3:66869326 1.10E-134 dispersed
Tan03g1063 Tan-Chr3:66869326 Tan11g0853 Tan-Chr11:7002074 1.10E-120 dispersed
Tan03g1062 Tan-Chr3:66863529 Tan03g1063 Tan-Chr3:66869326 2.10E-133 tandem
Tan03g1063 Tan-Chr3:66869326 Tan03g1064 Tan-Chr3:66869326 1.10E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1063 K09872 - csv:101215604 488.419