Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1064 ATGTCGGCCGCCAAGGACTACCAAGACCCGCCTCCAGCCCCATTAATCGACGCCGAGGAGCTCACTCAGTGGTCATTTTACAGAGCCATAATCGCCGAGTTCGTTGCCACGCTTTTGTTCTTGTACATTCTCGTTCTCACTGTGATTGGCTCTTCCAGGCTGTCCGACACCGAAAGCGGCGGTGAAATCTGCGGCGGTGTCGGCGTTTTGGGCATTGCCTGGGCAGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGAGGACATATTAACCCGGCGGTGACGTTCGGGCTGCTATTGGCTCGAAAAATCTCTCTAATCAGAGCTGTGTTTTACATTGTGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGGGTTGGCTAAATCATTTCAGAAGGCTTATTACGTTCGGTACAATGGTGGAGCCAATATGCTCTCTAATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAACGCTAGAGATTCTCACGTCCCTATTTTGGCGCCACTCCCGATTGGGTTTGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCTGCTCGAAGCTTAGGAGCTGCAGTGATCTTTAACAAAGCTGCCGCTTGGGATCATCACGTAACTTTTTCCCCAATCCTTCTCTTTTAA 741 51.42 MSAAKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYILVLTVIGSSRLSDTESGGEICGGVGVLGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLIRAVFYIVAQCLGAICGCGLAKSFQKAYYVRYNGGANMLSNEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKAAAWDHHVTFSPILLF 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66869326 66871708 + Tan0008382.2 Tan03g1064 746568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1064 246 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 240 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan03g1064 246 NCBIfam MIP family channel protein 32 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 SUPERFAMILY Aquaporin-like 20 238 IPR023271 -
Tan03g1064 246 Gene3D Glycerol uptake facilitator protein. 13 244 IPR023271 -
Tan03g1064 246 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1064 246 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Tan03g1064 246 FunFam Probable aquaporin PIP1-2 13 243 - -
Tan03g1064 246 CDD MIP 28 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1064 Tan-Chr3:66869326 Tan05g0256 Tan-Chr5:1952043 4.70E-102 dispersed
Tan03g1063 Tan-Chr3:66869326 Tan03g1064 Tan-Chr3:66869326 1.10E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1064 K09872 - csv:101215604 421.394