Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1068 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAGGAGATGGAGAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCTGGAGGAATGGTCCAAATGCCGCCGGTGAACGCCAGAGTTTTCTACTTTCCTCAAGGCCATGCGGAGCATGCGTGTAGCCCAGTTGATTTCAGGAGCTGTCCTAAGGTTCCTCCATATACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTCGCCGATCCTGACACGGATGAAGTCTTTGCCAAAGTTAGGTTGATTCCCATAAATGGAAGTGAACTAGATTTTGAAGAGGATGGAATTGGGAGGCTTAATGGGTCTGAACAGGATAAACCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCAGAAACAATCTTCCCTCGGTTGGATTATTCTGCTGACCCGCCTGTTCAGACGATTCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTCAGGCACATTTACAGGGGGACGCCTCGGCGACATCTTTTGACGACTGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGGGCAGAGAACGGAGATCTCTGCGTCGGGATTAGACGGGCGAAGAGGGGAATTGGAGATGGACCGGAGTCGTCGTGTGGATGGAATCCAGCAGGTGGGAACTGTGGTGTCCCATATGGAGCGTTCTCAGCGTTTTTGAGGGAAGATGAAAACAGACTGACGAGGTCTGCTAATGGCTTGATTGGAAATGGAAGTCTTGTGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCCTTTGAAATAGTATACTACCCAAGAGCTAGTACTCCTGAGTTCTGTGTCAAGGCAGGACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCCGGTATGAGGTTCAAGATGGCCTTCGAGACTGAGGACTCTTCGCGGATAAGCTGGTTCATGGGTACCATTAACTCGGTTCAGGTCGCTGACCCACTGCACTGGCCTGAATCACCATGGAGGCTTCTTCAGGTTACTTGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTCGAATTGGTATCGAACATGTCTCCTATTCACCTTGCCCCCTTCTCACCTCCAAGGAAAAAATTCAGATATCCACAACACCCTGATTTCCCACTCGATAACCAGCCTTCTGTGTCGTCGTTCTCTAGTTATCTCCATGGGCCCGGCAGCCCCTTCGGTTGTCCTCCCGACAACCACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAAATTTCCATCTCAGTAAACTGCAGTCAGGTCTGTTTCCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCCAGGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCGCATTCTACTCAAGCGTCGAAGAAATTTGACGACGTGAAGACTCCCCAGCTAATACTTTTCGGCCGACCCATACTTACCGAATTGCAGATGTCTCAAAGCTGCTCTGGTGATACTGTTTCTCCAGTTGGTACTGGAAATAGTTCGTCAGATGGAAACGGAGATAAAATGGCAAATTTCTCTGATGGTTCTGGATCTGCTCTGCATCAACAAGGCCAACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTTATGGAATCAGAAGACGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAACATGTTCGGTATAGATAATTCAGAAACGTTGAACCATGTCTTGTACCGCGATGTTTCCGGTGCTGTCAAACACGTCGGTGACGAACAATTCAGCGACTTCATCAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 47.31 MITFMDSKEKLKEMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACSPVDFRSCPKVPPYTLCRVSAIKFLADPDTDEVFAKVRLIPINGSELDFEEDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCGVPYGAFSAFLREDENRLTRSANGLIGNGSLVGKGKVKPESVIEAATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLHWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPSVSSFSSYLHGPGSPFGCPPDNHPAGMQGARHAHFGLSLSNFHLSKLQSGLFPIGYRSLDPAAGSTRLSGNARTEKPSMSENVSCLLTMAHSTQASKKFDDVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGDKMANFSDGSGSALHQQGQPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66922724 66926528 - Tan0013367.2 Tan03g1068 746572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1068 698 Gene3D - 610 696 - -
Tan03g1068 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g1068 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g1068 698 Gene3D - 118 222 IPR015300 -
Tan03g1068 698 FunFam Auxin response factor 118 222 - -
Tan03g1068 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Tan03g1068 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 225 IPR015300 -
Tan03g1068 698 FunFam Auxin response factor 325 398 - -
Tan03g1068 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Tan03g1068 698 Gene3D - 324 398 - -
Tan03g1068 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Tan03g1068 698 MobiDBLite consensus disorder prediction 550 592 - -
Tan03g1068 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Tan03g1068 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1068 Tan-Chr3:66922724 Tan05g0245 Tan-Chr5:1873929 1.30E-261 dispersed
Tan03g1067 Tan-Chr3:66922724 Tan03g1068 Tan-Chr3:66922724 0.00E+00 tandem
Tan03g1068 Tan-Chr3:66922724 Tan03g1069 Tan-Chr3:66922724 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26939 PF02362 B3 1.50E-21 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1068 K14486 - csv:101217039 1343.95