Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1076 ATGGAATCTAATTCTCCTAGATGGAGATCAATGACAGTAAGGTTCCAGGACGAGGAACGCCTCAAGGACGGAGAAGCGAAGAGGAGAAAGAAAGAGGTGGTCGGAGAATCGTCGTCGAGAGTGTTTTCGGAGGATTACGACGTGGTGGATCGGATGGTATTGGATCCAAGGTTGCCAATTTTGAACAGATGGAACAGGGTTTTTTTGGTGGCTTGTTTGGTGTCGCTATTTGTGGACCCTGTGTTTTTTTTCTTGCCGGTGGTGAAGGCGGAGGAAGGGTGCGTGGAAATGTGCGGCCGGCTGGGGGTGGCGCTGACGGTGGTGCGGTCGATGGCGGATGCGTTCTATATAACGCAGATTGTGGTGAGGTTTAGGACGGCTTATGTGGCTCCGTCGACGTCCAAGATCTTTGGGAGAGGGGAGCTCGTGATAGATCCTTCTAAGATTGCTGCTAATTATCTCGTTTTCCACTTTTGGCTTGATTTTGCTGCTGCATTGCCTCTTCCTCAGGCATTCATATGGGTTGCAATCCCAAACATTAGGGGTTCAAACATGACCCCATGGAGTTACTTTCTTCGATTCTCCATCCTCTTCCAATACTTCTTGAGGCTCTATCTCATCTTTCCTCTATCTGATCAAATCATTAAGGCTACTGGAGTTCTCATGAAAACGGCATGGGCGGGAGCGGTTTATAACTTAATGCTCTTTATGCTAGCAAGTCATGTTTTGGGGTCGTGTTGGTACCTTTTATGCATAGGAAGACAAATGGATTGCTGGAAAAAGGTTTGCAGTTTGGGGCATTTGGATTGCCAATATGAGTTTTTTGATTGTAAAGCTGTGGGAAATCCAAGTAGAGCTGCTTGGTTTGAAGCAACCAATATCTCAAATCTGTGTCATCCAACTGCCACCACTTTCTTCCATTTTGGGATTTTTTCTGATTCCAATTTTGCTTCTACTTCTTCCACCTTCTTCAATAGGTACTTCTATTGTTTTTGGTGGGGCTTGAGGAATTTAAGCTCCTTGGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAAGTTCGCGATTGTGATTGCGATTGTGGGATTGGTGCTTTTCGCACTTCTGATTGGAAATATGCAAACTTATCTTCAATCGAGCACTTTGAGACTGGAAGAATGGAGAGTGAGGAGGACAGACACAGAGCAATGGATGCGCCATAGGCAACTTCCATATGAACTCAAACAAAGCGTTAGAAAATATGACCAATTTCGATGGATCGCAACTCATGGGGTTGATGAACAACACATTCTTAAAGGCCTTCCTATGGATCTTAGACGAGATATCAAACGTCATCTTTGCCTTCATCTCGTTCGTCAGGTGCCACTGTTGGACGAAATGGAGGAGAGAATGTTGGAGGCAATATGCGAAAGGTTAAGACCTTGTTTAAGCACATCCAACACTTTCCCAGTGAACGAGATGCTCTTCATAATCCGAGGCCATCTCGACTCCCACACCACTAACGGCGGCCGCACCGGCTTCTTCAACTCCCGCCGCCTCGGCCCCACTGACCCTCCACCCTCGCCCCGCCGCCGTCCTCCCCTCCTCCACCCGCACCGTCAAGGCCATCACCCAAGTCGAGGCCTTTGCTCTCATTGCCGACGACTTGAAGTTCGTCGCCGCCTTCACAGCAAGCAGCTCCGCTACACTTTCAGGTTCTACTCCCACCAGTGCCGGACTTGGGCCGCCTGGTTTACCTACAAGCGCCGGAAGGAACCCAACGAGACTGTTGTTGGCGGTGGCGGCGGCCATGGGTCCTTGTTGACAAAGCCCCTTGAACCTGACTTTTCTGTTGAAGACCACAGGTGA 1854 48.54 MESNSPRWRSMTVRFQDEERLKDGEAKRRKKEVVGESSSRVFSEDYDVVDRMVLDPRLPILNRWNRVFLVACLVSLFVDPVFFFLPVVKAEEGCVEMCGRLGVALTVVRSMADAFYITQIVVRFRTAYVAPSTSKIFGRGELVIDPSKIAANYLVFHFWLDFAAALPLPQAFIWVAIPNIRGSNMTPWSYFLRFSILFQYFLRLYLIFPLSDQIIKATGVLMKTAWAGAVYNLMLFMLASHVLGSCWYLLCIGRQMDCWKKVCSLGHLDCQYEFFDCKAVGNPSRAAWFEATNISNLCHPTATTFFHFGIFSDSNFASTSSTFFNRYFYCFWWGLRNLSSLGQNLLTSSNVGEIKFAIVIAIVGLVLFALLIGNMQTYLQSSTLRLEEWRVRRTDTEQWMRHRQLPYELKQSVRKYDQFRWIATHGVDEQHILKGLPMDLRRDIKRHLCLHLVRQVPLLDEMEERMLEAICERLRPCLSTSNTFPVNEMLFIIRGHLDSHTTNGGRTGFFNSRRLGPTDPPPSPRRRPPLLHPHRQGHHPSRGLCSHCRRLEVRRRLHSKQLRYTFRFYSHQCRTWAAWFTYKRRKEPNETVVGGGGGHGSLLTKPLEPDFSVEDHR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66968446 66973151 - Tan0010328.1 Tan03g1076 746580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1076 617 Gene3D - 67 381 - -
Tan03g1076 617 Gene3D Jelly Rolls 456 519 IPR014710 -
Tan03g1076 617 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 519 - -
Tan03g1076 617 MobiDBLite consensus disorder prediction 528 543 - -
Tan03g1076 617 MobiDBLite consensus disorder prediction 503 543 - -
Tan03g1076 617 SUPERFAMILY Voltage-gated potassium channels 62 380 - -
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 371 380 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 421 428 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 120 129 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 327 344 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 353 364 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 PRINTS EAG/ELK/ERG potassium channel family signature 238 248 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan03g1076 617 MobiDBLite consensus disorder prediction 591 617 - -
Tan03g1076 617 Pfam Ion transport protein 66 384 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1076 617 SUPERFAMILY cAMP-binding domain-like 388 505 IPR018490 -
Tan03g1076 617 Gene3D Helix hairpin bin 386 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1076 Tan-Chr3:66968446 Tan09g1637 Tan-Chr9:68010666 1.00E-145 dispersed
Tan03g1076 Tan-Chr3:66968446 Tan05g0241 Tan-Chr5:1824058 9.50E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1076 K05391 - csv:101221856 777.704