Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1079 ATGGCGGCAACCTGCGAGCAAAACGAGCACAACAACGGCGGCGACTTTTGCATCGGCGGCCGGAACAATGACCCGTTGAACTGGGGCGTGGCAGCGGAGTCGCTGAAGGGAAGCCATTTGGAGGAAGTGAAACGGATGGTGGAGGAATACCGGCGGCCGGTGGTGAAGCTCGGAGGAGAGACGCTGACGATATCTCAGGTGGCTGCCATCGCAGCCCGGGACTCCGGCGTGACGGTAGAGCTGTCGGAGTCGGCGAGAGACGGCGTCGAGGCCAGTAGTAACTGGGTGATGGAGAGCATGAGCAAAGGGACCGACAGCTACGGCGTCACTACCGGCTTCGGCGCCACTTCTCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGAGAGCTCATACGATTTCTAAATGCAGGGGTGTTTGGAAATGGGACTGAATCGAGCCACACTTTGCCTCACTCGGCAACAAGAGCAGCCATGTTGGTTAGAATCAACACTCTCCTTCAAGGATACTCGGGCATCAGATTTGAAATTTTGGAAGCCATAACCAAGCTTCTGAACAACAATGTTACTCCATGCTTGCCTCTTCGAGGAACAATTACGGCTTCTGGTGATCTTGTTCCTCTTTCTTACATTGCTGGATTACTCACTGGCCGACCAAACTCCAAAGCCATTGGACCAAATGGAGAAAGTTTAGTTGCAAAGGAGGCTTTCAAACAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAACCCAAGGAAGGGTTGGCTCTTGTCAATGGGACTGCTGTTGGTTCTGGGTTAGCCTCTATTGTTCTCTTTGAGGCTAATATTTTAGCTATTTTAGCTGAGATCTTGTCTGCTATTTTTGCTGAGGTTATGCAAGGTAAGCCAGAATTTACCGATCATTTGACTCATAAGTTGAAGCATCATCCTGGTCAGATTGAGGCGGCTGCAATTATGGAACACATTTTGGATGGAAGCTCTTACATGAAATCTGCTAAGAAATTACATGAAATTGATCCTCTTCAAAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATCAATTCAGTCAATGATAATCCTTTAATTGACGTTTCAAGGAACAAAGCTTTACATGGAGGTAACTTTCAGGGGACTCCAATTGGAGTTTCAATGGACAACACTCGTTTGGCTATAGCTTCGATTGGTAAACTCATTTTTGCTCAATTTTCTGAGCTTGTGAATGATTTCTACAACAATGGTTTGCCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAAATTGCTATGGCTTCCTATTGCTCTGAGCTTCAATATCTGGCAAACCCAGTAACAAGCCATGTCCAAAGTGCTGAACAACACAATCAAGATGTTAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGACCTGAGACATTTGGAAGAAAACTTGAAGAGCACGGTAAAAAACACAGTAAGCCAAGTGGCCAAGAAAGTTCTTACTACGGGTGCTAATGGAGCTCTTCATCCATCAAGATTTTGTGAGAAGGATTTACTCAAAGTTGTTGACAGAGAATATACCTTTGTTTACATTGATGACCCATGCAGTGCCACTTATCCATTAATGCAGAAGTTGAGGCAAGTTCTTGTGGAGCATGCACTCGTAAATGGAGAAAATGAGAAGAACTCAAATAGTTCAATCTTTCAAAAGATTGGAGTTTTTGAGGAGGAATTGAAAGTCATCTTACCTAAGGAAGTAGAAAGTGCAAGGTTGGCTTATGAGAGTGGAAACTCAACTATTCAAAATCAAATTAAGGAATGTCGATCATATCCACTATACAAGTTTGTGAGAACAGAGTTAGGAACTGAGTTGCTTACCGGAGAGAAGGTAAAATCCCCCGGAGAAGTGTGTGAGAAAGTATTCACAGCTTTATGCCAAGGAAGAATGATCGATCCAATCTTAGAGTGTTTAAAGGAATGGAATGGTGCTCCGATCCCCATATGTCTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCTGAAATTCTTTCTGCCATTTTCGCGGAGGTCATGCAAGGAAAGCCAGAATTTACCGATCACTTGACTCATAAGTTAAAGCATCATCCTGGTCAAATCGAGGCTGCTGCAATTATGGAGCACATCTTAGATGGAAGTTCATACATGAAAACTGCAAAGAAGTTGCATGATATGGACCCTCTTCAAAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGATTCTCCACAAAGTCTATTGAGCGGGAGATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTCTCGATGGATAATACTCGTTTGGCTGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACTAGTCATGTCCAAAGCGCCGAGCAACATAATCAAGATGTCAACTCTCTTGGTTTGATCTCTTCAAGAAAAACAGCTGAAGCCATTGACATTTTGAAGCTCATGTCTTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAGAACTTGAAGAATGTAGTGAAAAGTACCTTCTTGTCGAACATGCTTTGGGAAATGGTGAAGATGAAAAGAACACCAACACTTCAATCTTTCAAAAAATTGGAGCTTTTGAAGAGGAATTGA 3090 43.11 MAATCEQNEHNNGGDFCIGGRNNDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAARDSGVTVELSESARDGVEASSNWVMESMSKGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLVAKEAFKQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKSAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFVYIDDPCSATYPLMQKLRQVLVEHALVNGENEKNSNSSIFQKIGVFEEELKVILPKEVESARLAYESGNSTIQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFTALCQGRMIDPILECLKEWNGAPIPICLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHDMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTFLSNMLWEMVKMKRTPTLQSFKKLELLKRN 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67008633 67025325 + Tan0011798.1 Tan03g1079 746583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1079 1029 CDD PAL-HAL 716 986 IPR001106 -
Tan03g1079 1029 FunFam Phenylalanine ammonia-lyase 528 649 - -
Tan03g1079 1029 Gene3D - 528 649 IPR023144 -
Tan03g1079 1029 FunFam Phenylalanine ammonia-lyase 723 1011 - -
Tan03g1079 1029 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824(InterPro)
Tan03g1079 1029 Pfam Aromatic amino acid lyase 62 540 IPR001106 -
Tan03g1079 1029 Pfam Aromatic amino acid lyase 716 991 IPR001106 -
Tan03g1079 1029 NCBIfam phenylalanine ammonia-lyase 24 705 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan03g1079 1029 NCBIfam phenylalanine ammonia-lyase 716 1017 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan03g1079 1029 FunFam Phenylalanine ammonia-lyase 18 261 - -
Tan03g1079 1029 Gene3D Fumarase/aspartase (Central domain) 723 1024 - -
Tan03g1079 1029 CDD PAL-HAL 60 525 IPR001106 -
Tan03g1079 1029 FunFam Phenylalanine ammonia-lyase 262 564 - -
Tan03g1079 1029 SUPERFAMILY L-aspartase-like 716 1000 IPR008948 GO:0003824(InterPro)
Tan03g1079 1029 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Tan03g1079 1029 Gene3D - 17 261 IPR024083 -
Tan03g1079 1029 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841(InterPro)
Tan03g1079 1029 PANTHER HISTIDINE AMMONIA-LYASE 716 1017 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1079 Tan-Chr3:67008633 Tan03g1083 Tan-Chr3:67047779 0.00E+00 dispersed
Tan03g1079 Tan-Chr3:67008633 Tan03g1080 Tan-Chr3:67030938 9.10E-240 tandem
Tan09g1108 Tan-Chr9:63385246 Tan03g1079 Tan-Chr3:67008633 1.10E-241 transposed
Tan11g0873 Tan-Chr11:7147840 Tan03g1079 Tan-Chr3:67008633 0.00E+00 wgd
Tan03g1079 Tan-Chr3:67008633 Tan05g0231 Tan-Chr5:1770630 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1079 K10775 - csv:101217907 1302.35