Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1080 ATGGCAGCTATTCAGAAGATTGAAGACAGCTTGTGCCATACCCGTAATGATCCACTTAACTGGGGTTTGGCTGCTGAGGCCCTCAAGGGGAGTCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATAGAAGGCCTCTGGTGAAACTTGGTGGTGAGACACTCACCATTTCCCAAGTGGCTGCCATTGCCACTCTTGATAACCATGTGATTGTTGAATTGTCTGACTCTGCAAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGACAGCATGAACAAAGGCACTGATAGCTATGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGAACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTCGATTCTTGAATCTTTGGAATCTTTGGAACCAAGTGAGTCTAATCATACTTTGCCTCATTTCGCAGCGAGGCAGCCATGTTGGTGAGGATCAATACTCTTCTTCAAGGCTACTCCGTTCATACATGAAAACTGCAAAGAAGTTGCACGAAATGGACCCTCTTCAAAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCAGTAAATGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTCTCGATGGACAATACTCGTTTAGCTGTTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCAGAGCTTGTTAATGATTTCTACAATAATGGATTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTTAAAGGTGCTGAAATTGCTATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCAAACCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTTGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCAATTGACATTTTGAAGCTCATGTCTTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACTTGGAAGAGAACTTGAAGATCAAAGTTAAAAGTACAGTGAGCCAAGTGGCAAAAAAAGTCCTCACCACTACCTTTAATGGTGGCGCACTCCATCCTTCAAGATTTTGCGAGAAAGATCTACTCAAAGTTGTTGATAGAGAATACACTTTTGCTTACATTGATGATTCGTGCAGCGCTACTTATCCATTGATGCAAAAGTTGAGACAAGTTCTTGTCGAGCATGCTTTGAATAATGGAGAGGATGAAAAAGACATGACTACTTCAATCTTTCAAAAGATTGGTGCCTTTGAAGAGGAATTGAAGACCATTTTGCCCAAGGAAGTGGAATGTGTGAGATTGGCATATGAAAATGGAGATGCAACAATTGATAACCAGATTAAAGAATGCAGATCTTACCCATTATATAAGTTTGTGAGAGAAGAGTTGGGAACTAAATTGTTAACTGGGGAGAAGGTTATATCTCCAGGAGAAGAGTGCGAAAAAGTTTTCACTGCATTGTGCCAAGGAAAGATGATTGATCCAATTTTGGAATGCTTGAAGGAGTGGAATGGTGCTCCAATTCCCATATGCTGA 1662 41.34 MAAIQKIEDSLCHTRNDPLNWGLAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATLDNHVIVELSDSARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNLWNLWNQVSLIILCLISQRGSHVGEDQYSSSRLLRSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKIKVKSTVSQVAKKVLTTTFNGGALHPSRFCEKDLLKVVDREYTFAYIDDSCSATYPLMQKLRQVLVEHALNNGEDEKDMTTSIFQKIGAFEEELKTILPKEVECVRLAYENGDATIDNQIKECRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67030938 67033249 + Tan0008208.1 Tan03g1080 746584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1080 553 FunFam Phenylalanine ammonia-lyase 365 487 - -
Tan03g1080 553 NCBIfam phenylalanine ammonia-lyase 165 543 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan03g1080 553 SUPERFAMILY L-aspartase-like 17 132 IPR008948 GO:0003824(InterPro)
Tan03g1080 553 Gene3D Fumarase/aspartase (Central domain) 165 548 - -
Tan03g1080 553 SUPERFAMILY L-aspartase-like 165 553 IPR008948 GO:0003824(InterPro)
Tan03g1080 553 Gene3D - 365 487 IPR023144 -
Tan03g1080 553 Gene3D - 9 163 IPR024083 -
Tan03g1080 553 Pfam Aromatic amino acid lyase 156 369 IPR001106 -
Tan03g1080 553 Pfam Aromatic amino acid lyase 55 128 IPR001106 -
Tan03g1080 553 PANTHER HISTIDINE AMMONIA-LYASE 165 553 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1080 Tan-Chr3:67030938 Tan03g1082 Tan-Chr3:67043279 3.10E-250 dispersed
Tan03g1079 Tan-Chr3:67008633 Tan03g1080 Tan-Chr3:67030938 9.10E-240 tandem
Tan03g1080 Tan-Chr3:67030938 Tan03g1081 Tan-Chr3:67036706 5.40E-239 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1080 K10775 - csv:101218382 727.243