Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1081 ATGTCACCGGCGGCTCCCTTCCAACAACGTCTTGTCTTCCAGGACGATGATAATTCAGTGGAGAAGGAGAGCTTCTGCATTAGCCGTAATGATCCACTTAACTGGGGTTTGGCGGCTGAGGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATAGAAGGCCTCTTGTGAAACTTGGTGGTGAGACACTCACCATTTCCCAAGTGGCTGCCATTGCCACTCTTGATAACCATGTGGTTGTTGAATTGGCTGACTCTGCGAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGACAGCATGAACAAAGGCACTGATAGCTATGGTGTTACTCTCTTTTTGTTGATTCGATTCTTGAATGCCGGAATCTTTGGGCAGGGTGAGTCTAATCATACTTTGCCTCATTCTGCAACAAGGGCAGCCATGTTGGTGAGGATCAATACTCTCCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATCATAACATCACTCCTTGCTTGCCCCTTCGTGGAACCATCACCGCTACGGAGATCTTGTTCCTCTTTCTTACATTCTTTGGATTGCTCACCGAGTCGATCAACTCTAAAGTCATTGGTCCAAATGGAGAAAGTCTCGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGACTTGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCCATTGTTCTCTTTGAGGCCAATATTTTGGCCGTTTTGTCCGAGATTTTGTCTGCCATTTTCGCCGAGGTCATGCAAGGAAAGCCAGAATTCACCGATCACTTGACTCATAAGCTGAAACATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAATACATCTTGGATGGAAGCTCATACATGAAAACAGCAAAGAAGTTGCATGAAATGGACCCTCTTCAAAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGATTCTCCACAAAATCTATTGAGCGTGAGATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCGAGGAATAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCTATTGGAGTCTCCATGGACAACACTCGTTTGGCCATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTGCCCTCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAATATCTTGCAAATCCAGTGACTAGTCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAGACAGCTGAAGCCATTGACATTTTAAAGCTTATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTAAGGCATTTGGAAGAAAACTTGAAGAGTACGGTAAAAAGCACTATTAGCCAAATTGCTAAGAAAGTGTTGACCACATCCTCTAATGGTGCACTTCACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTTGTTGACAGAGAGTACACCTTCACTTATATTGATGATCCATGCAGTGCTACTTACCCATTGAGCCAAAAATTGAGGCAAGTTCTCGTCGAGCATGCACTTGCGAACGGTGATGGTGAAAAGAACATAGACACGTCAATCTTCCAAAAGATTACTGCTTTTGAGGATGAACTAAAGGCAATATTACCAAAGGAAGTTGAAGAAGCAAGATTGGCATATGAGAGTGGAAATTCTAAAGTTGAAAATCAGATCAAGGATTGCAGATCTTACCCTTTATATAGATTTGTGAGAGAAGAATTGGGTACAAAACTACTAACTGGAGAAAAGGTTATATCTCCCGGAGAAGAATGCGAGAAAGTGTTCACAGCTTTGTGTCAAGGCGAGATGATTGACTCCATCTTAGAGTGCTTGAAGGGGTGGAATGGTGCTCCAATCCCTATTTGTTAA 2115 42.88 MSPAAPFQQRLVFQDDDNSVEKESFCISRNDPLNWGLAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATLDNHVVVELADSARAGVKASSDWVMDSMNKGTDSYGVTLFLLIRFLNAGIFGQGESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITATEILFLFLTFFGLLTESINSKVIGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTISQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFTYIDDPCSATYPLSQKLRQVLVEHALANGDGEKNIDTSIFQKITAFEDELKAILPKEVEEARLAYESGNSKVENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALCQGEMIDSILECLKGWNGAPIPIC 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67036706 67039028 - Tan0006384.1 Tan03g1081 746585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1081 704 FunFam Phenylalanine ammonia-lyase 251 552 - -
Tan03g1081 704 Gene3D Fumarase/aspartase (Central domain) 251 699 - -
Tan03g1081 704 Pfam Aromatic amino acid lyase 121 527 IPR001106 -
Tan03g1081 704 SUPERFAMILY L-aspartase-like 31 704 IPR008948 GO:0003824(InterPro)
Tan03g1081 704 CDD PAL-HAL 67 514 IPR001106 -
Tan03g1081 704 Gene3D - 23 119 IPR024083 -
Tan03g1081 704 Gene3D - 120 250 IPR024083 -
Tan03g1081 704 FunFam Phenylalanine ammonia-lyase 517 638 - -
Tan03g1081 704 Gene3D - 517 638 IPR023144 -
Tan03g1081 704 PANTHER HISTIDINE AMMONIA-LYASE 28 704 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan03g1081 704 NCBIfam phenylalanine ammonia-lyase 31 694 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1081 Tan-Chr3:67036706 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1080 Tan-Chr3:67030938 Tan03g1081 Tan-Chr3:67036706 5.40E-239 tandem
Tan03g1081 Tan-Chr3:67036706 Tan03g1082 Tan-Chr3:67043279 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1081 K10775 - csv:101218617 1207.97