Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1082 ATGGCACCTGCTCAATTCGAACAAATTGCTCACCAGAATGGCTCAGTGGAGAGCTTTTGCACTAGCCATCCTGATCCACTCAATTGGGGTGTGGCGGCTGAGGCTCTCAAGGGGAGTCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATAGAAGGCCTCTGGTGAAGCTTGGTGGTGAGACACTCACCATTTCCCAAGTGGCTGCCATTGCCACTCTTGATAACCATGTGATCGTGGAATTGGCTGAATCTGCGAGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAACAAAGGGACTGACAGTTATGGTGTCACTACTGGTTTTGGTGCTACCTCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTCGATTCTTGAATGCTGGAATCTTTGGAACTGGGGCTGAGTCTAATCATACTTTGCCTCATTCTGCAACAAGGGCAGCTATGTTGGTAAGGATCAATACTCTTCTTCAAGGCTACTCTGGTATTAGATTTGAGATTCTGGAAGCCATAACCAAACTCTTGAATCATAACATCACTCCTTGCTTGCCCCTTCGTGGAACCATCACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGGTTGCTCACTGGTCGACCGAACTCTAAAGCTGTTGGTCCAAATGGGGAAAGTCTCGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGCTTCTTTGAGTTGCAGCCTAAGGAAGGACTTGCTCTTGTCAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCCGAAATTCTTTCTGCCATTTTCGCAGAGGTCATGCAAGGAAAGCCAGAATTTACCGATCACTTGACTCATAAGTTGAAACATCATCCTGGTCAAATCGAGGCTGCTGCAATTATGGAACACATCTTAGATGGAAGTTCATACATGAAAACTGCAAAGAAGTTGCACGAAATGGATCCTCTTCAGAAGCCTAAACAAGATCGTTACGCTCTTAGGACTTCACCCCAATGGCTTGGTCCTTTGATTGAAGTAATTCGCTTCTCCACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAATACTCGGTTGGCCATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTAACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATCTCTTCAAGAAAAACAGCTGAAGCCATCGACATCTTGAAGCTAATGTCGTCGACGTTTTTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGTACTGTTAAAAGCATCGTTAGCCAAGTAGCAAAGAAAATGTTAACCACATCCTCCAATGGTGCACTTCATCCATCAAGATTTTGTGAGAAAGATCTACTCAAAATTGTTGACAGAGAATATACATTTGCATACATTGATGATCCGTGCAATGCTACTTACCCATTGATGCAGAAATTGAGACAAGTTCTTGTTGAACATGCCCTCACCAATGGTGAAAATGAAAAGAACACAAACACTTCCATCTTTCAGAAGATTTGTGCTTTTGAAGAGGAATTAAAAGTAGTTCTACCAAAGGAAGTTGAAAATGCACGGTTGGCATATGAGAGTGGAAATTCTAAGATTGAAAATCAGATTAAGGATTGCAGATCTTATCCGTTATATCGATTTGTGAGAGAAGAGTTAGGAACAAAATTGCTTACTGGAGAAAGGGTGGTGTCTCCCGGAGAAGAGTGTGAAAAGGTATTTGCAGCTTTGTGTCAAGGAAAAATGATCGATTCTATCCTAGAGTGCTTGAAAGAATGGAATGGTGCTCCCATTCCCATTTGTTAA 2151 42.49 MAPAQFEQIAHQNGSVESFCTSHPDPLNWGVAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATLDNHVIVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGTGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKIVDREYTFAYIDDPCNATYPLMQKLRQVLVEHALTNGENEKNTNTSIFQKICAFEEELKVVLPKEVENARLAYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGERVVSPGEECEKVFAALCQGKMIDSILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67043279 67045757 - Tan0012252.1 Tan03g1082 746586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1082 716 Gene3D - 17 262 IPR024083 -
Tan03g1082 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Tan03g1082 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824(InterPro)
Tan03g1082 716 CDD PAL-HAL 61 526 IPR001106 -
Tan03g1082 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Tan03g1082 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Tan03g1082 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Tan03g1082 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Tan03g1082 716 PANTHER HISTIDINE AMMONIA-LYASE 22 716 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan03g1082 716 Gene3D - 529 650 IPR023144 -
Tan03g1082 716 FunFam Phenylalanine ammonia-lyase 263 574 - -
Tan03g1082 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1080 Tan-Chr3:67030938 Tan03g1082 Tan-Chr3:67043279 3.10E-250 dispersed
Tan03g1082 Tan-Chr3:67043279 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1081 Tan-Chr3:67036706 Tan03g1082 Tan-Chr3:67043279 0.00E+00 tandem
Tan03g1082 Tan-Chr3:67043279 Tan03g1083 Tan-Chr3:67047779 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1082 K10775 - csv:101222092 1335.09