Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1083 ATGGCCAAAGATGTAAAGACCACATGCGAGAGCTCCACTATTTATGACCCACTCAACTGGGGTGTAGCGGCGGAGTCCCTCAAGGGAAGCCATATTGATGAGGTGAAACGCATGGTGGAAGAGTACCGGAGGCCCCTTGTCAAGCTTGATGGTGAAACCCTCACTATTTCTCAAGTGGCTGCCATTGCTACTAGGGAGTACTCTGATGTCACTGTTGAGCTTTCTGAGTCTACTAGAGCTTGTGTTAAAGCTAGTAGTGATTGGATTATGGAGAGCCTTAACAAAGGCACTGATAGCTATGGTGTTACTACTGGCTTTGGTGCTAATTCTCATAGAAGGACCAAACAAGGTGGAGATCTACAAAAGGAGCTGGTTCGATTTTTGAATGCTGGAATTTTTGGAAGTGGGGTTGAGTCGAGCCATGCTTTGCCCCACTCGGCTACGAGGGCGGCTATGTTGGTGAGAGTCAACACTCTTCTTCAAGGCTACTCTGGTGTTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACTGTTACTGCTTCTGGTGATCTTGTTCCTCTTTCTTATATTGCTGGGTTGCTCACTGGTCGACCGAACTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCTAAGGAGGCTTTCAAACAAGCTGGTATTCTTTCTGGTTTCTTTGAGTTCCAACCTAAGGAAGGTTTTGCTATTGTCAATAGTACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCGGAAATTCTTTCGGCCATTTTTGCTGAGGTCATACAAGGAAAGCCTGAGTTCACCGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCGGCTGCAATTATGGAACACATTTTGGATGGAAGTTCGTACATGAAAACTGCCAAGAAGTTGCATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGCTACGCTCTTAGAACATCACCCCAGTGGTTGGGTCCTTTGATTGAAGTAATTCGATTCTCCACAAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGACAACCCATTGATTGACGTTTCTAGAAACAAAACATTGCATGGAGGCAACTTTCAAGGAACACCAGTTGGAGTTTCCATGGACAATACTCGCTTGGCCATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAATGGGTTGCCTTCTAATCTTTCTGCAAGTAGGAACCCAAGCTTGGATTATGGGTTTAAAGGTTCTGAAATTGCTATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTAAAACTAATGTCTTCTACTTTTTTAGTTTCTCTTTGCCAAGCAATCGACTTGAGAAATTTGGAGGAAAATTTGAAGAGCATTGTTAAAAGCACTATAAGCCAGGTAACCAAGAAATGGTTGATCACATCCAGTAATGATGCACTTGATCATCCCTCAAGATTTTGCGAGGACTTATTGAAGGTTGTTGATAGAGAATACGTGTTTGCTTATATAGATGATCCATGTAGTGCTACTTACCCGTTGATGCAAAAATTGAGACAAGTTTTCGTTGAGCATGCTCTCGCAAATAGTGATGACAAAAAGAACATAAACACGTCAATCTTCCAAAAGATTGTTGCTTTTGAAGAGGAGTTGAAGGCAAATTTACCAAAGGAAGTTGAAAATACGAGGTTGGCATATGAGAATGGAAATGCACAAATTAAGAACCAAATTGAAGATTGCAGATCTTATCCATTATATAGATTTGTGAGGAAAGAATTGGGAATAAAATTATTAACAGGTGAAAAAGTGATATCTCCCGGAGAAGAGTGCGAAAAGGTATTTACAGCTTTATGTCAAGGAAAAATAATTGATTCTATTCTAGAATGTTTGAAGGAGTGGGATGGGACTCCAATTCCCCTATCCGAATTTACCGATCACTTGACTCATAAGTTGAAGCATCATCCCAGTCGATCGAAATTCGCTGCAATTATGGAACACATCTTAGATGGAAGTTCATACATGAAAACTGCAAAGAAGTTGCATGAAATGGACCCTCTTCAAAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAGTGGCTTGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCAGTCAATGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTCTCGATGGACAATACTCGTTTGGCTATTGCTTCAATTGGAAAACTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACTAGTCATGTCCAAAGCGCCGAGCAACACAACCAAGATGTCAACTCTCTTGGTTTGATCTCTTCAAGGAAAACAGCTGAAGCCATTGACATTTTGAAACTCATGTCCTCAACATTTTTGGTTGCTCTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTTAAAAGCACTGTAAGCCAACTAGCCAAGAAAGTGTTGACCACATCCTCTAATGAACTTATTCTTAATGCGTTGTTTAATTCTCTCTTAAGTTCTTATTATGGGTTTAATCTTTTATTTTCCTTCAATTTGGGTCATTTTCACCATTTCCTCTATCTTTCGGCCAATAAATAG 3009 40.61 MAKDVKTTCESSTIYDPLNWGVAAESLKGSHIDEVKRMVEEYRRPLVKLDGETLTISQVAAIATREYSDVTVELSESTRACVKASSDWIMESLNKGTDSYGVTTGFGANSHRRTKQGGDLQKELVRFLNAGIFGSGVESSHALPHSATRAAMLVRVNTLLQGYSGVRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFKQAGILSGFFEFQPKEGFAIVNSTAVGSGLASIVLFEANILAVLSEILSAIFAEVIQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKTLHGGNFQGTPVGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVSLCQAIDLRNLEENLKSIVKSTISQVTKKWLITSSNDALDHPSRFCEDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVFVEHALANSDDKKNINTSIFQKIVAFEEELKANLPKEVENTRLAYENGNAQIKNQIEDCRSYPLYRFVRKELGIKLLTGEKVISPGEECEKVFTALCQGKIIDSILECLKEWDGTPIPLSEFTDHLTHKLKHHPSRSKFAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQLAKKVLTTSSNELILNALFNSLLSSYYGFNLLFSFNLGHFHHFLYLSANK 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67047779 67054490 - Tan0020582.1 Tan03g1083 746587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1083 1002 SUPERFAMILY L-aspartase-like 709 973 IPR008948 GO:0003824(InterPro)
Tan03g1083 1002 PANTHER HISTIDINE AMMONIA-LYASE 709 972 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan03g1083 1002 Gene3D Fumarase/aspartase (Central domain) 707 977 - -
Tan03g1083 1002 FunFam Phenylalanine ammonia-lyase 255 539 - -
Tan03g1083 1002 CDD PAL-HAL 52 518 IPR001106 -
Tan03g1083 1002 Gene3D - 7 254 IPR024083 -
Tan03g1083 1002 NCBIfam phenylalanine ammonia-lyase 16 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan03g1083 1002 SUPERFAMILY L-aspartase-like 16 707 IPR008948 GO:0003824(InterPro)
Tan03g1083 1002 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Tan03g1083 1002 FunFam Phenylalanine ammonia-lyase 7 254 - -
Tan03g1083 1002 FunFam Phenylalanine ammonia-lyase 521 642 - -
Tan03g1083 1002 Gene3D Fumarase/aspartase (Central domain) 255 702 - -
Tan03g1083 1002 Pfam Aromatic amino acid lyase 54 528 IPR001106 -
Tan03g1083 1002 Pfam Aromatic amino acid lyase 709 947 IPR001106 -
Tan03g1083 1002 Gene3D - 521 642 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1079 Tan-Chr3:67008633 Tan03g1083 Tan-Chr3:67047779 0.00E+00 dispersed
Tan03g1083 Tan-Chr3:67047779 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1082 Tan-Chr3:67043279 Tan03g1083 Tan-Chr3:67047779 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1083 K10775 - csv:101218856 1222.61