Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1118 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCCTCTCTCCGCCCGGTGCCAATGCCGCCGCCGTCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCGGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACGAGAAGGAACCTGCTCCAAATCTCAGAGAAAGATGAATCATCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGTCAACGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATCGTTACAGACGACTCCGACGACGATGCGGTCAATCCAAAGCCCGGAACATTACGATACGCCGTAATACAGCCACAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATAAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGAGGCGCCAACGTCCACATCGTCGGCGGCGGTTGCATCACTTTGCAATACATAAGCAACGTAATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGGTCGAGTCCAACACATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATTTTCGGGTCGAAGGACATATGGATTGACCATTGTTCGCTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGCTCCTGGGTCACAGTGATAGCTACTCGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGGGAGAAGCTAGTGCAGCGGATGCCACGGTGCCGGCGAGGTTACATCCACGTGGTCAACAACGACTTCACTCAATGGGAAATGTACGCAATCGGCGGCAGCGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAAGTAACCAAGCGTGTCGAGACTGCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGACGGCGACATCCTCGTCAACGGCGCCTTCTTCGTCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAGTCCGCCGCCCTAATCGACCAACTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGCCGGGACAACAATTTGGGCATGTGGACCACTGGCCCTAACGGCGGAGGTTTTGTAATTGGCTCTGGCCCTGATTACACTGACGACATGTCGGAAAGCTTCTCCCGGATTCGGTCTCCTTTTTTTGTTATGCTATTTTCTGTGGTGTTGTGTTCTTTTTGTGCATTGGCACTTGCCTTTGTGCGCCTATGA 1449 55.07 MLATTCIVLLALLLPSLSPPGANAAAVALNLTLPGQHPSPELVAQEVHRKVNASITRRNLLQISEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFVIGSGPDYTDDMSESFSRIRSPFFVMLFSVVLCSFCALALAFVRL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67304374 67309069 + Tan0019667.1 Tan03g1118 746622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1118 482 SMART amb_all 150 347 IPR002022 -
Tan03g1118 482 FunFam Pectate lyase 75 417 - -
Tan03g1118 482 SUPERFAMILY Pectin lyase-like 76 404 IPR011050 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 122 147 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 98 115 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 366 390 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 222 243 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 158 174 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 395 418 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Tan03g1118 482 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Tan03g1118 482 Gene3D - 75 417 IPR012334 -
Tan03g1118 482 PANTHER PECTATE LYASE 18-RELATED 27 418 IPR045032 GO:0030570(InterPro)
Tan03g1118 482 Pfam Pectate lyase 160 339 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1118 Tan-Chr3:67304374 Tan04g0640 Tan-Chr4:5408393 7.70E-181 dispersed
Tan03g1118 Tan-Chr3:67304374 Tan11g0926 Tan-Chr11:7527333 4.50E-181 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1118 K01728 - csv:101203012 885.174