Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1125 ATGCCGATCCGTAACATTGCCATTGGAAGGCCCGAAGAGGCTACCCATCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACGTTGATTTTTGTCTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAACTTACTGATGGCGGTGCCGCAACTCCCGCCGGCCTTATCTCCGCCTCCATTGCCCATGCCTTTGCCCTATTTGTTGCCGTCTCTGTTGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTTACCTTTGGTGCCTTCGTCGGTGGCAACATCACCCTCCTACGTGGCATCATCTACTGGATCGCCCAGCTCCTCGGATCCGTCGTCGCCTGCTTGCTCCTTAAGTTTGTCACGGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTTGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTTGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATAGCACCGATCGCCATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCGTCGATGAACCCGGCAGTGGCATTTGGGCCGTCGGTGGTGAGCTGGTCATGGGACAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGGCTCATTTACGAGTTCGTTTTCATTTCCAACACCCACGAGCAGCTGCCAGTCACCGAGTACTGA 753 56.84 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDSHWVYWAGPLIGGGLAGLIYEFVFISNTHEQLPVTEY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67392328 67393961 - Tan0022052.1 Tan03g1125 746629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1125 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Tan03g1125 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Tan03g1125 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
Tan03g1125 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan03g1125 250 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Tan03g1125 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2564 Tan-Chr2:94226151 Tan03g1125 Tan-Chr3:67392328 9.40E-58 dispersed
Tan03g1125 Tan-Chr3:67392328 Tan07g1804 Tan-Chr7:69590827 6.80E-80 dispersed
Tan05g2117 Tan-Chr5:71839586 Tan03g1125 Tan-Chr3:67392328 4.00E-81 transposed
Tan11g0768 Tan-Chr11:6481157 Tan03g1125 Tan-Chr3:67392328 4.00E-96 transposed
Tan03g1125 Tan-Chr3:67392328 Tan08g1843 Tan-Chr8:70567235 1.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1125 K09873 - csv:101204225 466.463