Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1132 ATGACGACGACCTTGCCATCATTGACATCGCGAGGCCTGTTGGCGTCTCAGTTGATCGTGTTGTTGCTTATTGTCCATGGCAATGCAGCAACCTCGTTTGGAGATGTGCAACATCATGCAGAGCGTAGGGAATTAGACGCGACACAACTTATTAAAAAACATCACAAGCGCCCGCCGTTTAAGCCCGGCCCATGGAAGCAAGCTCGCGCTACCTTCTATGAAGGTGGCGCCGGGACCTTTGGAAGTGCATGTGGGTACGACGACGTGGAAAAGAAAGGGTACGGGATGCAGACGGCGGCGTTGAGCGATGCGCTGTTCAACAACGGCCAGGGCTGCGGCGCTTGCTTCGAAATCAAATGCGTTGATCCTCAGTTGTGCAAGCCCGGTCAGCCGTCGCTCGTGGTCACGGGCACCAATCACTGCCCGCCCGGCAGCAGTGGCGGTTGGTGCAATCCCCCGCTCGAGCATTTCGATATAGCCAAGCCTGTTTTCATCAACATTGCTGAGTACAAGTCTGGCGTTGTTCCCGTCACTTACCGCAGGGTTTCATGTCAAAAGGAAGGAGGAATTCGATTCACAATAACAGGAAATCCATACTACAACGAAGTGTTAGTATGGAACGTGGGAGGAGCTGGAGAATTGACGAGTGTCCTAGTGAAGGGTCACCGCAAGCTCAAATGGACAACCATGACTCGTTTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGTGAGTCGCTCACCTTCAGAGTTCGAGCCAGTGATGGCAGATTCTCCACTGCATGGCATGTTGCTCCCATTGATTGGCAGTTTGGGGTTTACTCGGTCAATTTTGCCATAAAAAACAATTGCCAGTTTCCAATCTGGCCAGGAGCCTTGACCGGTGCCGGGAGCCAACTGTCGACCACCGGCTTCGAATTAAACCCTAAATCAACGATGACGGTGACCACTTTTCCGCCGTGGTCTGGTAGGTTTTGGGCTCGAACTCTTTGCTCTACAGATGCAATTGGGAAGTTCTCTTGTGGAACTGCCGATTGTGGTAGCGGCCAAGTCACATGCAATGGAGCCGGCGCAATTCCACCGGCAAGCCTTGTCGAATTCACTATAGCACCAAACGGCGGCCAGGATTTCTTTGATATCAGCCTCGTTGATGGCTTCAATTTGCCCGTTTCAGTGACACCAATAGGTGGGTCGGGTGAGTGTAAATCAGTACTTTGTGCAGGAAACGTGAATAACGTTTGTCCACCAGAATTAGCCGTTAAAGACCAAGGTGGCGTAGTGATCGCATGTAAAAGTGCTTGTATGGCTTTCAATCAACCGGAATATTGTTGCAGTGGCGACCACGATCAACCACAAACTTGTCCACCGACAAATTATTCAATGATATTCAAGAACCAGTGCCCTCAAGCTTATAGTTACGCTTACGACGATAAGACTAGTACCTTTACATGTACAGGTGGAGCCAATTATGCCATTACATTTTGTCCTTGA 1497 50.43 MTTTLPSLTSRGLLASQLIVLLLIVHGNAATSFGDVQHHAERRELDATQLIKKHHKRPPFKPGPWKQARATFYEGGAGTFGSACGYDDVEKKGYGMQTAALSDALFNNGQGCGACFEIKCVDPQLCKPGQPSLVVTGTNHCPPGSSGGWCNPPLEHFDIAKPVFINIAEYKSGVVPVTYRRVSCQKEGGIRFTITGNPYYNEVLVWNVGGAGELTSVLVKGHRKLKWTTMTRLWGQKWTTNAMMVGESLTFRVRASDGRFSTAWHVAPIDWQFGVYSVNFAIKNNCQFPIWPGALTGAGSQLSTTGFELNPKSTMTVTTFPPWSGRFWARTLCSTDAIGKFSCGTADCGSGQVTCNGAGAIPPASLVEFTIAPNGGQDFFDISLVDGFNLPVSVTPIGGSGECKSVLCAGNVNNVCPPELAVKDQGGVVIACKSACMAFNQPEYCCSGDHDQPQTCPPTNYSMIFKNQCPQAYSYAYDDKTSTFTCTGGANYAITFCP 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67454049 67463860 + Tan0003342.1 Tan03g1132 746636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1132 498 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576(InterPro)
Tan03g1132 498 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Tan03g1132 498 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Tan03g1132 498 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576(InterPro)
Tan03g1132 498 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576(InterPro)
Tan03g1132 498 Pfam Expansin C-terminal domain 190 268 IPR007117 -
Tan03g1132 498 CDD TLP-PA 280 497 - -
Tan03g1132 498 ProSiteProfiles Thaumatin family profile. 277 498 IPR001938 -
Tan03g1132 498 PANTHER EXPANSIN-A15 37 274 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 199 274 IPR007117 -
Tan03g1132 498 FunFam THAUMATIN-LIKE PROTEIN 1 278 498 - -
Tan03g1132 498 ProSitePatterns Thaumatin family signature. 339 355 IPR017949 -
Tan03g1132 498 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 189 IPR007112 -
Tan03g1132 498 SMART dpbb_1 98 179 IPR007112 -
Tan03g1132 498 Gene3D - 49 185 IPR036908 -
Tan03g1132 498 SMART tha2 280 498 IPR001938 -
Tan03g1132 498 PRINTS Expansin signature 164 177 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 133 143 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 265 281 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 147 164 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 188 200 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 200 221 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 PRINTS Expansin signature 236 257 IPR002963 GO:0009664(InterPro)
Tan03g1132 498 Pfam Thaumatin family 284 498 IPR001938 -
Tan03g1132 498 Pfam Lytic transglycolase 98 179 IPR009009 -
Tan03g1132 498 SUPERFAMILY PHL pollen allergen 186 275 IPR036749 -
Tan03g1132 498 SUPERFAMILY Barwin-like endoglucanases 64 207 IPR036908 -
Tan03g1132 498 Gene3D - 188 280 IPR036749 -
Tan03g1132 498 Gene3D Thaumatin 281 498 IPR037176 -
Tan03g1132 498 SUPERFAMILY Osmotin, thaumatin-like protein 279 498 IPR037176 -
Tan03g1132 498 CDD DPBB_EXPA_N 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1132 Tan-Chr3:67454049 Tan11g0699 Tan-Chr11:6079714 2.90E-74 dispersed
Tan05g0779 Tan-Chr5:5689316 Tan03g1132 Tan-Chr3:67454049 7.40E-24 dispersed
Tan07g1687 Tan-Chr7:68246125 Tan03g1132 Tan-Chr3:67454049 4.80E-36 dispersed
Tan03g1132 Tan-Chr3:67454049 Tan03g1133 Tan-Chr3:67466632 5.60E-126 tandem
Tan06g0929 Tan-Chr6:7890764 Tan03g1132 Tan-Chr3:67454049 6.70E-120 transposed
Tan03g1132 Tan-Chr3:67454049 Tan08g1834 Tan-Chr8:70423423 9.00E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1132 - - - 0.0