Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1148 ATGGAGGCCCTTCTTCTCAACGCATCCACTTCTCACCCACTTGCTCGAAAATGTCTCCTTTCATCCCGACCCTCTTTCTCCCTTGGGTCCTCCATTCCGATTGACAATCGAAACAGAATTGGACTTACCAGGCCGCCATTCATCCAATCCATGCTTTCAAAACACACGGTTGAGGTCTCTAATAATTCTGTATTGGACTCTTCGGTTGCGACTCTTGGAGACTCATTGGCTGCCACCCATTTGCCTCCTCGCAAAAGGGTGTCGGCGGATTCGCTGCAGTTCCCGCCTGGCTATCTCGGCGCCATTCCCGATCGTTCGGGTTCTGTTGATGCCGAGGATAGCCTCAACGCGATGGAGTATTTGACCAGAATTTTGGGTTCGAAGGTGTACGATGTGGCTATTGAATCTCCCTTGCAGCTTGCTCCCAAGTTGTCTGAGCGTTTGGGCGTCAATATCTGGCTCAAGAGGGAGGACTTGCAGCCTGTATTCTCATTCAAGCTCCGAGGAGCTTATAACATGATGGCCAAACTTCCAGAAGAACAGTTGGAAAAAGGAGTTATATGCTCGTCAGCTGGAAATCATGCTCAAGGAGTTGCATTAGCTGCTAAGCGATTAAAATGTGATGCTGTGATTGCTATGCCTGTTACTACTCCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCAACTGTTGTTCTTGTTGGAGATTCATACGATGAGGCACAAGCATACGCTAAAAAGCGGAGCAAAGAGGAAGGTCGTGCATTCATACCCCCTTTTGATCACCCTGATGTTATAGCCGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATGAAGGGCCCATTGCATGCAATTTTCGTGCCAGTTGGGGGTGGTGGTCTAATAGCCGGTATTGCCGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAGATTATTGGAGTGGAGCCATCTGATGCCAATGCTATGGCCTTATCATTATGTCATGGCCAAAGAATAATATTGGACATTGCTGGAGGTTTTGCAGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACATTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTCGTTAGTCGTGATGCTATATGTGCCTCAATAAAGGATATGTTTGAAGAGAAGAGGAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAATATTATGGTTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTTAGAATAGTTACTGAACTTGCCAATGTTGGTCGTGAACGAGAGGCTGTGCTCGCAACTATAGTGCCAGAGAAACCTGGAAGCTTTAAAAGATTTTGTGAACTGGTTGGGCCTATGAACATTACAGAATTCAAGTATAGATATAATTCCGAAAAAGAGGCAGTTGTTCTTTATAATGTTGGTATGCATATGCCTTCAGAACTTGAAGAAATGAAGAATCGGATGATATCTTCTCAGCTTGAAACTTATAATCTCACAAATAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCGAATGTTGAAAACGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTCAGTCCTCGCTGGAACATTAGTTTGTTTCACTATCGTGGGCAGGGCGAAACAGGTGCAAATATATTAGTTGGATTTCAGATCGATAAATCAGATATGGGCGAATTCCATGAACGTGCTAGGAGGCTTGGTTACGAGTACGTCGTGGTAACTGATGATGGTGTCTTTCAGCTTCTAATGCACACATAG 1857 44.59 MEALLLNASTSHPLARKCLLSSRPSFSLGSSIPIDNRNRIGLTRPPFIQSMLSKHTVEVSNNSVLDSSVATLGDSLAATHLPPRKRVSADSLQFPPGYLGAIPDRSGSVDAEDSLNAMEYLTRILGSKVYDVAIESPLQLAPKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPEEQLEKGVICSSAGNHAQGVALAAKRLKCDAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSKEEGRAFIPPFDHPDVIAGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRIILDIAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREREAVLATIVPEKPGSFKRFCELVGPMNITEFKYRYNSEKEAVVLYNVGMHMPSELEEMKNRMISSQLETYNLTNNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYRGQGETGANILVGFQIDKSDMGEFHERARRLGYEYVVVTDDGVFQLLMHT 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67755471 67762896 + Tan0006235.1 Tan03g1148 746652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1148 618 CDD ACT_ThrD-I_1 443 526 - -
Tan03g1148 618 CDD Thr-dehyd 121 425 - -
Tan03g1148 618 ProSiteProfiles ACT-like domain profile. 537 608 IPR001721 -
Tan03g1148 618 SUPERFAMILY ACT-like 524 616 IPR045865 -
Tan03g1148 618 Gene3D Biosynthetic Threonine Deaminase; Domain 3 443 617 IPR038110 -
Tan03g1148 618 FunFam Threonine dehydratase 443 617 - -
Tan03g1148 618 Pfam C-terminal regulatory domain of Threonine dehydratase 528 614 IPR001721 -
Tan03g1148 618 Pfam C-terminal regulatory domain of Threonine dehydratase 434 523 IPR001721 -
Tan03g1148 618 CDD ACT_ThrD-I_2 536 616 - -
Tan03g1148 618 FunFam L-threonine dehydratase 231 415 - -
Tan03g1148 618 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 122 607 IPR050147 GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER)
Tan03g1148 618 Gene3D - 169 260 IPR036052 -
Tan03g1148 618 ProSiteProfiles ACT-like domain profile. 444 515 IPR001721 -
Tan03g1148 618 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 157 170 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Tan03g1148 618 Pfam Pyridoxal-phosphate dependent enzyme 135 421 IPR001926 -
Tan03g1148 618 Gene3D - 137 415 IPR036052 -
Tan03g1148 618 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 90 471 IPR036052 -
Tan03g1148 618 NCBIfam threonine ammonia-lyase, biosynthetic 119 615 IPR005787 GO:0004794(InterPro)|GO:0009097(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1145 Tan-Chr3:67628019 Tan03g1148 Tan-Chr3:67755471 1.20E-199 dispersed
Tan03g1146 Tan-Chr3:67661266 Tan03g1148 Tan-Chr3:67755471 7.40E-175 dispersed
Tan03g1148 Tan-Chr3:67755471 Tan03g1251 Tan-Chr3:68829533 1.60E-191 dispersed
Tan03g1147 Tan-Chr3:67698785 Tan03g1148 Tan-Chr3:67755471 2.80E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1148 K01754 - csv:101205909 1064.68