Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1159 ATGGTGTTGAAGACCGAGCTCTGTCGATTCAGTGGCGCGAAGATATATCCCGGTAAAGGAATCAGATTTGTCCGTGCAGATTCACAGGTTTTCCTGTTTGCGAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAAAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAACCCTACTCAAGGTCCATAGTGGGTGCAACATTGGAGGTTATCCAAAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGATGCTGCTAGAGAAGCAGCCCTTCGGGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGGTGGCCAAAACACAGAAGACACAGAACAAGGCTAATGTTGCTAGGGGAGCTGCTCCTAAAGGACCAAAACTTGGTGGTGGTGGCGGCAAACGTTGA 495 47.27 MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVVAKTQKTQNKANVARGAAPKGPKLGGGGGKR 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67877281 67879159 + Tan0004366.1 Tan03g1159 746663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1159 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Tan03g1159 164 MobiDBLite consensus disorder prediction 121 164 - -
Tan03g1159 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Tan03g1159 164 Coils Coil 112 139 - -
Tan03g1159 164 SMART 4TRASH 8 46 IPR011017 -
Tan03g1159 164 Pfam Ribosomal protein L24e 3 67 IPR000988 -
Tan03g1159 164 Gene3D - 69 138 - -
Tan03g1159 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 159 IPR000988 GO:0002181(PANTHER)|GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0022625(PANTHER)
Tan03g1159 164 FunFam 60S ribosomal protein L24 3 64 - -
Tan03g1159 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Tan03g1159 164 MobiDBLite consensus disorder prediction 121 136 - -
Tan03g1159 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1159 Tan-Chr3:67877281 Tan08g1794 Tan-Chr8:69937610 2.40E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1159 K02896 - csv:101206866 243.047