Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1160 ATGGACTGGAATAATGGCTGTGATTTTACTCCTAATTTTGTTTCTCCACTACTTCCATCACAATCTTCCTCTGCATTGCTCTTCAACTACAACTACAACAACTACAACTATAATTTGGATCAGTTTCCTGAGACGAAGAAAGCGGGGGTGGAAGGTCAGAAAGACGAGGTTGGAGGAGTGGAACAGAAGAAGAAGAGATTAAGCCAAGATCAGTTGGAGTCATTAGAGAGAAGCTTTGAAGAGGAAGTGAAGTTGGATCCTGATAGGAAAATGAAGCTGTCAAAGGAACTTGGGCTCCAACCAAGGCAAATAGCAGTCTGGTTTCAGAATAGAAGAGCTCGCTGGAAGGCTAAGCAGCTTCAGCATCTCTATCATACTCTCAAACAAGACTTTGACACTATCTCTACAGAAAAACACAACCTTCAACAAGAGGTGATGAAACTAAGAAGCATGCTAAGAGAACAAGTAGCGAGGAATCAAATGTTAATGGCTTACACAGACGTCTCCGAGGAAGAGGCGGCGGAGAGCACGTCGGGGGGCGTTCGGAGCTGTAACAATTACATCTTCAATGTGGAAAATGTCAACCAAATATCAGCTTCTTCACCTCCAGCTCCATTCTGGTGGGGTGCTGAGACTGCTCACTTTCCTTCTTATCCTTAG 660 44.09 MDWNNGCDFTPNFVSPLLPSQSSSALLFNYNYNNYNYNLDQFPETKKAGVEGQKDEVGGVEQKKKRLSQDQLESLERSFEEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLQHLYHTLKQDFDTISTEKHNLQQEVMKLRSMLREQVARNQMLMAYTDVSEEEAAESTSGGVRSCNNYIFNVENVNQISASSPPAPFWWGAETAHFPSYP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 67907286 67909320 - Tan0000484.1 Tan03g1160 746664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1160 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan03g1160 219 Pfam Homeobox associated leucine zipper 119 152 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g1160 219 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Tan03g1160 219 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Tan03g1160 219 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677(InterPro)
Tan03g1160 219 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677(InterPro)
Tan03g1160 219 SMART HOX_1 61 122 IPR001356 GO:0003677(InterPro)
Tan03g1160 219 CDD homeodomain 62 119 IPR001356 GO:0003677(InterPro)
Tan03g1160 219 Gene3D - 58 123 - -
Tan03g1160 219 SUPERFAMILY Homeodomain-like 59 119 IPR009057 -
Tan03g1160 219 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan03g1160 219 FunFam Homeobox-leucine zipper protein HOX13 66 115 - -
Tan03g1160 219 Coils Coil 138 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1160 Tan-Chr3:67907286 Tan05g2079 Tan-Chr5:71222985 1.50E-19 dispersed
Tan03g1279 Tan-Chr3:69066971 Tan03g1160 Tan-Chr3:67907286 6.10E-51 transposed
Tan03g1160 Tan-Chr3:67907286 Tan08g1793 Tan-Chr8:69929903 4.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26944 PF00046 Homeodomain 4.60E-17 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1160 - - - 0.0