Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1202 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCACCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACTTTCGCCTCAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCAGCTTCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCTCCCGTTTCCCCTGTTGTAGCCTTGCCCTCGCCGGACACAGATCTGACCATCCCACCCCCGCCCCTTGCGGTGGCCGGATCCGAGGCGGCGATCCAGTCGAGCCCTAACCCGAACCCGAACCGGTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCGATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAGAGGATTTGA 522 57.09 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSPSPSSSPIDPPPVSPVVALPSPDTDLTIPPPPLAVAGSEAAIQSSPNPNPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68328553 68331237 + Tan0008700.1 Tan03g1202 746706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1202 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270(InterPro)
Tan03g1202 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan03g1202 173 MobiDBLite consensus disorder prediction 65 90 - -
Tan03g1202 173 Gene3D - 95 169 IPR035896 -
Tan03g1202 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan03g1202 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270(InterPro)
Tan03g1202 173 MobiDBLite consensus disorder prediction 47 114 - -
Tan03g1202 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270(InterPro)
Tan03g1202 173 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan03g1202 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Tan03g1202 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 173 IPR050652 -
Tan03g1202 173 MobiDBLite consensus disorder prediction 48 64 - -
Tan03g1202 173 SUPERFAMILY AN1-like Zinc finger 105 168 IPR035896 -
Tan03g1202 173 FunFam Zinc finger AN1-type containing 6 94 169 - -
Tan03g1202 173 Gene3D - 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0345 Tan-Chr1:2989401 Tan03g1202 Tan-Chr3:68328553 1.10E-16 dispersed
Tan03g1202 Tan-Chr3:68328553 Tan05g0113 Tan-Chr5:937748 5.10E-42 dispersed
Tan03g1202 Tan-Chr3:68328553 Tan07g1749 Tan-Chr7:69067817 2.40E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1202 - - - 0.0