Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1248 ATGCGTGGCGCCTCTCGAGCTCCGAACAGCTCGGAGCCACTGCCGCACTCCCAAACTGCTCAGATCCTGCCGCCTTTCAAGCGGCAGCTTGCTTTCGACTCCACCAAGCCGCCCTTCGTTCCTCCGGGTGACTATTACCGCTTTGGTGGCGGTTCTTCCAATGCTCTTGATCAACAACCTGATGCTATCGTTGTTAAACCTCTCAAACCAAAGCAGAAGGGTATCATGTATAACAACGTGGCTGAATCTAATGACTGCATTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGAGGAAGGGTGTACAATAAGTCAAAGGCTTCAAGGAGAACTACATCTGGCCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTAGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAGACTTTGAAGGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTTACTGAAGAAGACATCAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTTATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATGCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTTGCAACAGAAGCAATTATTGGGGATAGTAGAAACGAAATTGAACCTCAAGCTCAACTGTCCCAGTACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCGGATGCCGAAGTTAGCATTACAGATATGTGGAGAACAGATTGTATCCTTTTTTTTATAATTATCGTACCATTACCATTGTGTTATGCATGTCTTGGGGGTGAATACAATAGAAAAAGAACTGATTATAGATTGAATTCTTTCACTTCAGCTACAGCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCACGACTTTATAATGTCTGATATTAGTGCCCAAGGGCCAAGACCAGCAAGCCCACATTCAGAGACGGGCGAAGCACCATCTGATGTTAGCCTAAGACAAAGCCAAACAAACAGTTAA 1536 41.8 MRGASRAPNSSEPLPHSQTAQILPPFKRQLAFDSTKPPFVPPGDYYRFGGGSSNALDQQPDAIVVKPLKPKQKGIMYNNVAESNDCIHDQGSSKDALSFVQTPVSAKGGRVYNKSKASRRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDTSMLQVDVENLSFEERRLDDKIRALQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYAQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGDSRNEIEPQAQLSQYSSSCDVNGSNEFPGGMMKIMPSEVDNDADYWLLSDAEVSITDMWRTDCILFFIIIVPLPLCYACLGGEYNRKRTDYRLNSFTSATADIAWDQSDMVPHDFIMSDISAQGPRPASPHSETGEAPSDVSLRQSQTNS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68818810 68828325 - Tan0017984.1 Tan03g1248 746752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1248 511 CDD E2F_DD 224 325 IPR032198 GO:0046983(InterPro)
Tan03g1248 511 MobiDBLite consensus disorder prediction 496 511 - -
Tan03g1248 511 Gene3D - 139 212 IPR036388 -
Tan03g1248 511 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan03g1248 511 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan03g1248 511 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983(InterPro)
Tan03g1248 511 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
Tan03g1248 511 MobiDBLite consensus disorder prediction 480 511 - -
Tan03g1248 511 MobiDBLite consensus disorder prediction 110 136 - -
Tan03g1248 511 Coils Coil 228 255 - -
Tan03g1248 511 PANTHER TRANSCRIPTION FACTOR E2F 43 422 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan03g1248 511 FunFam E2F transcription factor 1 139 212 - -
Tan03g1248 511 SUPERFAMILY E2F-DP heterodimerization region 223 325 IPR037241 -
Tan03g1248 511 Gene3D - 219 325 - -
Tan03g1248 511 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1248 Tan-Chr3:68818810 Tan03g1250 Tan-Chr3:68818810 2.80E-266 dispersed
Tan03g1248 Tan-Chr3:68818810 Tan03g1249 Tan-Chr3:68818810 2.30E-220 tandem
Tan03g1248 Tan-Chr3:68818810 Tan05g0087 Tan-Chr5:799927 6.10E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26950 PF16421 E2F_CC-MB 4.10E-33 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1248 K06620 - csv:101212480 712.605