Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1249 ATGTATAACAACGTGGCTGAATCTAATGACTGCATTCATGATCAGGGATCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGAGGAAGGGTGTACAATAAGTCAAAGGCTTCAAGGAGAACTACATCTGGCCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTAGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAGACTTTGAAGGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCATTGCAGGAAAGACTGAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTTACTGAAGAAGACATCAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTTATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATGCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTTGCAACAGAAGCAATTATTGGGGATAGTAGAAACGAAATTGAACCTCAAGCTCAACTGTCCCAGTACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCGGATGCCGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCACGACTTTATAATGTCTGATATTAGTGCCCAAGGGCCAAGACCAGCAAGCCCACATTCAGAGACGGGCGAAGCACCATCTGATGTTAGCCTAAGACAAAGGTGA 1185 40.34 MYNNVAESNDCIHDQGSSKDALSFVQTPVSAKGGRVYNKSKASRRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDTSMLQVDVENLSFEERRLDDKIRALQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYAQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGDSRNEIEPQAQLSQYSSSCDVNGSNEFPGGMMKIMPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFIMSDISAQGPRPASPHSETGEAPSDVSLRQR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68818810 68825826 - Tan0017984.2 Tan03g1249 746753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1249 394 MobiDBLite consensus disorder prediction 35 61 - -
Tan03g1249 394 Coils Coil 153 180 - -
Tan03g1249 394 PANTHER TRANSCRIPTION FACTOR E2F 25 347 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan03g1249 394 Gene3D - 144 250 - -
Tan03g1249 394 CDD E2F_DD 149 250 IPR032198 GO:0046983(InterPro)
Tan03g1249 394 SMART E2F_TDP_2 70 135 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan03g1249 394 Gene3D - 64 137 IPR036388 -
Tan03g1249 394 Pfam E2F/DP family winged-helix DNA-binding domain 72 135 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan03g1249 394 Pfam E2F transcription factor CC-MB domain 149 249 IPR032198 GO:0046983(InterPro)
Tan03g1249 394 SUPERFAMILY Winged helix DNA-binding domain 70 133 IPR036390 -
Tan03g1249 394 MobiDBLite consensus disorder prediction 40 61 - -
Tan03g1249 394 MobiDBLite consensus disorder prediction 367 394 - -
Tan03g1249 394 SUPERFAMILY E2F-DP heterodimerization region 147 250 IPR037241 -
Tan03g1249 394 FunFam E2F transcription factor 1 64 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1249 Tan-Chr3:68818810 Tan05g0087 Tan-Chr5:799927 7.80E-123 dispersed
Tan03g1248 Tan-Chr3:68818810 Tan03g1249 Tan-Chr3:68818810 2.30E-220 tandem
Tan03g1249 Tan-Chr3:68818810 Tan03g1250 Tan-Chr3:68818810 1.70E-226 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26951 PF16421 E2F_CC-MB 2.60E-33 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1249 K06620 - csv:101212480 723.776