Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1260 ATGGGGGTTCCACAGGCGATGGAAATTCTGAGCAAGAGAGCCGCACTTGTCAGAGAATCGCTGCAGAAGAGCCAGAATGTTACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCGGAAAGTATACTAGCTCAGTTTGATCTTACACGCAAGGCTGAGGCTAAAATACTCAGAGGGCCACACGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAACTACGAAGCACAAATCGCTACTTTACTGGGAACAAAAATTTCAAAAGTAACGATGCTATTCTTACCCATACAAGCAACTTGCTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTTTTTGATTGCCTTCCCAACTCTTTGCGTCCATCATCAGCATCTGCGCACCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGCCATCAACAACAACTATTTAGAATATACAGGGATACTCGTGCTTCAGTTTTAGAACAAAGTCTTAGGAAATTAGGTGTTGAGAGGCTTAGCAAGGACGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATCGCTGTCAAACTGCTGTTTGCTGGGGAAAAGAAAATCTGTGATCAAATATTTGATGGTGCAGACTCTCTCCAGGATCAATGCTTTGCAGATGTGACTGCAAACAGTGTGTCAATGCTACTAAGTTTTGGAGAGGCAATTGCCAGAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTTTGAAATAATGCGAGAACTGCAATCTGAGGTTGAAACACTTTTTGGAACTAAAGCATGCATTGAAATGCGGGATTCTGCATTGAGCTTAACACAACGCCTTGCTGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAACTATGTCAAGTTCTTATTTGACTACCAATCTACTTTGAAGCAACTATTCCAAGACTTTGACGCTAGTGATCCAGATGCTCAATTAGCAGTGGTAACTACAAGAATTACGCAGGCCCTTCAGACTAATCTTGATGGAAAATCTAAGCAATATAGGGATCCTGCATTAACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTCTGCAGTGCCTCACTGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTCAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAATGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCTGTTGCTGAAGTTTTATTGCCGGCCTACCGATCCTTTATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCTGAGGATCTTGAGCGCATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAACAAAAGCGCTAG 1917 42.88 MGVPQAMEILSKRAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESILAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKNFKSNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGEKKICDQIFDGADSLQDQCFADVTANSVSMLLSFGEAIARSKRSPEKLFVLLDMFEIMRELQSEVETLFGTKACIEMRDSALSLTQRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRITQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68895106 68908809 - Tan0016758.1 Tan03g1260 746764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1260 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 631 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan03g1260 638 SUPERFAMILY Cullin repeat-like 75 629 IPR016159 -
Tan03g1260 638 Pfam Exo70 exocyst complex subunit C-terminal 273 626 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan03g1260 638 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Tan03g1260 638 Gene3D Exocyst complex component Exo70 74 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1260 K07195 - - csv:105436019 1195.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0677 Tan-Chr3:62297719 Tan03g1260 Tan-Chr3:68895106 1.10E-52 dispersed
Tan03g1260 Tan-Chr3:68895106 Tan04g0719 Tan-Chr4:6197485 4.90E-276 dispersed
Tan03g1260 Tan-Chr3:68895106 Tan09g2370 Tan-Chr9:73415933 5.70E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0719 . 10 653 EXO70 exocyst subunit family AT5G03540 76.1 2.5e-283 971.8
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 9.7e-267 916.8
Tan04g2073 . 9 303 EXO70 exocyst subunit family AT5G03540 59.5 2.4e-108 390.6
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G52340 79.6 3.8e-297 1017.7
Tan04g0719 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 4.0e-270 927.9
Tan04g2073 . 4 303 EXO70 exocyst subunit family AT5G52340 59.9 1.3e-116 417.9
Tan03g0677 . 1 130 EXO70 exocyst subunit family AT5G52340 51.2 4.0e-44 177.2
Tan03g1260 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.3e-174 610.5
Tan04g0719 . 147 653 EXO70 exocyst subunit family AT5G52350 59.3 1.4e-165 580.5
Tan08g2409 . 1 628 EXO70 exocyst subunit family AT5G58430 67.2 9.4e-248 853.6
Tan08g2409 . 1 627 EXO70 exocyst subunit family AT1G07000 52.0 4.2e-176 615.5
Tan10g1341 . 59 672 EXO70 exocyst subunit family AT5G13150 53.3 1.5e-174 610.5
Tan11g1421 . 141 712 EXO70 exocyst subunit family AT5G13150 50.2 2.2e-162 570.1
Tan11g1421 . 114 713 EXO70 exocyst subunit family AT5G13990 53.1 7.4e-185 644.8
Tan04g2865 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 2.3e-217 752.7
Tan04g2865 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 1.6e-210 729.9
Tan04g2865 . 9 608 EXO70 exocyst subunit family AT3G14090 64.8 1.2e-221 766.9
Tan05g2961 . 16 652 EXO70 exocyst subunit family AT5G50380 65.0 1.8e-236 816.2
Tan09g2370 . 14 651 EXO70 exocyst subunit family AT5G50380 62.7 2.2e-229 792.7
Tan02g2612 . 13 669 EXO70 exocyst subunit family AT4G31540 71.9 9.9e-283 969.9
Tan04g0347 . 20 621 EXO70 exocyst subunit family AT3G55150 50.6 1.7e-156 550.4
Tan04g0347 . 24 613 EXO70 exocyst subunit family AT2G39380 51.2 1.2e-157 554.3
Tan08g1964 . 26 631 EXO70 exocyst subunit family AT3G09520 55.4 1.2e-178 624.0
Tan05g0340 . 16 600 EXO70 exocyst subunit family AT5G59730 50.6 7.8e-157 551.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74