Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1265 ATGAACGATCTGTTTTCCTCCGATTCCTTCCGCCGAGAGCAGCACCACCACTCCGTCGAGATGGCCCCCAGCGCGCCGTCGTCAACGACGATCAATCTCAACAGCTTCTACGAGGACGTCGAGTCCGTGAAGGCGGAGTTGACGGAACTCGAACGCCTCTATCGAAACCTACAGAACTCTCACCAACAGAGCAAGACTCTGCACAACTCCAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGATTCATCAAGCTCCGATTGGAGGATCTCGACCGGTCCAATGCCGAGAACCGTAATCTTCCTGGTTGCGGCTATGGCTCCTCCGCCGACCGGTCGAGAACTTCCGTCGTCAACGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAACAGATTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTGAACGAAGATATTTTACGATTACAGGGGAAAATCCCGATGAGAAGACGGTTGATCTGTTGATCTCCACAGGTGAAAGCGAGACATTCCTGCAAAAAGCGATACAGAAGCAAGGAAAAGGCAGAGTTTTAGAAACGATTCAAGAGATTCAAGAAAGGCACGACGCAGTGAAGGACATGGAGAAGAATCTGCGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTCCAAGCCCAAGGTCAGCATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCCGCCGTCAAGCGCGCCGCCACGGACCTACAAACCGCAAGATATTACCAGAAGAACACCCGAAAATGGATCTTCATTGGCGTCGGTGTTCTTGCACTCATCCTCTTCATCATTATCATCTCTGTCGTCGTCGCCAATAAGAACAAAAACAACTAG 912 50.66 MNDLFSSDSFRREQHHHSVEMAPSAPSSTTINLNSFYEDVESVKAELTELERLYRNLQNSHQQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEDLDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGKGRVLETIQEIQERHDAVKDMEKNLRELHQVFMDMAVLVQAQGQHLDDIESQVTRANSAVKRAATDLQTARYYQKNTRKWIFIGVGVLALILFIIIISVVVANKNKNN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68938151 68940519 + Tan0003661.1 Tan03g1265 746769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1265 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan03g1265 303 CDD SNARE_syntaxin1-like 202 264 - -
Tan03g1265 303 Coils Coil 203 223 - -
Tan03g1265 303 FunFam Syntaxin 132 196 296 - -
Tan03g1265 303 PANTHER SYNTAXIN 35 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan03g1265 303 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Tan03g1265 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Tan03g1265 303 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Tan03g1265 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Tan03g1265 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Tan03g1265 303 Gene3D - 190 298 - -
Tan03g1265 303 Coils Coil 33 67 - -
Tan03g1265 303 MobiDBLite consensus disorder prediction 1 19 - -
Tan03g1265 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan03g1265 303 Pfam SNARE domain 241 291 IPR000727 -
Tan03g1265 303 SMART tSNARE_6 198 265 IPR000727 -
Tan03g1265 303 Gene3D - 31 163 - -
Tan03g1265 303 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1265 Tan-Chr3:68938151 Tan05g3221 Tan-Chr5:84265978 2.00E-81 dispersed
Tan03g1265 Tan-Chr3:68938151 Tan08g1616 Tan-Chr8:65581678 2.60E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1265 K08486 - csv:101213443 483.026