Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1266 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCTTCAAGCAACATCGGCGGATTCGGATACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATACTCTTGGCTTCCTATTACTGCACCAGAACAGGCCTATCGTCGACCTCCGTGATTCAGAGGAACGCCAATCTCTCGACGCCGGCGCGGCAGGCGGAGGAGGAAGCCGTCGTCGTCGACATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTCTATTCGGAGGCGAAGCTTCAGAAGAACGATTCTACTGCTTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCTGATGTTCTTCGGCTTTTGCCTGATTGCGGCCATTTGTTCCACCTCAAGTGCGTCGATCCATGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTATCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 519 54.53 MNNGTADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRTGLSSTSVIQRNANLSTPARQAEEEAVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68944272 68944965 + Tan0022081.1 Tan03g1266 746770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1266 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 166 IPR045899 -
Tan03g1266 172 SUPERFAMILY RING/U-box 83 154 - -
Tan03g1266 172 SMART ring_2 107 148 IPR001841 -
Tan03g1266 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Tan03g1266 172 FunFam E3 ubiquitin-protein ligase ATL6 66 154 - -
Tan03g1266 172 CDD RING-H2_EL5-like 106 149 - -
Tan03g1266 172 Pfam Ring finger domain 106 149 IPR001841 -
Tan03g1266 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2321 Tan-Chr2:91958876 Tan03g1266 Tan-Chr3:68944272 1.30E-21 dispersed
Tan03g1266 Tan-Chr3:68944272 Tan10g0126 Tan-Chr10:1394021 5.60E-17 dispersed
Tan10g0189 Tan-Chr10:1874735 Tan03g1266 Tan-Chr3:68944272 3.00E-27 transposed
Tan11g0967 Tan-Chr11:7779023 Tan03g1266 Tan-Chr3:68944272 2.00E-14 transposed
Tan03g1266 Tan-Chr3:68944272 Tan08g1608 Tan-Chr8:65449384 1.70E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1266 - - - 0.0