Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1272 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCGCCGCCTCAGAACCCATCGCCGGCTCCACCGGCCAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATCGAGGAGCGTCAGGCCCTCGCTTCCCGTCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGATTACGTCTCCCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAATTGCTGCCGAATTTGTCTGGCCCTGCCGCTATTCTCAGAATTTTTGGGGTTACGAAGGAAGGACATAGTGTGTGCTGTCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGCATGGGTCCTGATGATATCTCTATTTTTCACCGAACACTCGAGGCTAGAATGAAGGAGGTAAATAGGAACAGTAAGGCACCCAGTTTTGTGCGCCGTATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGGCTTCTCAATCCTTTCTTAAAATTGTTGTTGCACTGCCAACGATGGTCACCAGCTGCCGTGGTATTCTTGACAGAGGCATACAAATTGATGGCTTTGGTATGAAGAGCTTCATGACATATGAAAGCAATGTCCTTTTTGCCCTCCGTTTCATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCAAGGATCCCGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTTATTCGAAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGCGTTGATGTCTTATCATTTGATACGGAACGTGAAGTTTTACTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATCGAGAGAGCCGAGGCTTTGAAAATAGCAGAATTTCCAATATTGGGTCGGATCAGGAATAACAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCAATGCAACGAGATTATAAATTAAGCTCATACTCGTTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAGAGCATCAAGGTACTCTCTCAACTCCTCAGGAAGGCAAAACAGAAAAGCCTTGTTATTCCGAATGCTAAACAGGCAGGTTCTGATCAAGGAACCTACGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGCTGGATTTTGCATCTCTGTATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGTTCGTAAGCTAAACCTGCCCCCTGAACATTTCAATAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACTGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAACTAGCTCTGAAGATAAGCGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAGCACACAAAGAAGCTTGTGGAAGAAAAATTTACAACACTTGGGGGCTATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCTGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGAGAAGCAGCTGACTATATCAGTGGTACTTTCATAAATCCGATCAAGTTAGAGTTTGAGAAGGTCTATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACGGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAGCACGATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTAGTTATCACTAAGGGACTGACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGTGTACCTTATGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGACCCTCAGTACTATCTCGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAATGCTAGCAAGGAACTTCTACACGGAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCTAAGAAACAACTTACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGTCAGACAAAACACTCTGCTCACACTGCAAAGGAAGAGAAGCCGAACTTTATTGCAAAGCTGTAGCAAATGTGTCTGATCTGGAGATGGTTTTTGGGAGGCTTTGGACGCAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTCCTTTGTACAAGTCGAGACTGTCCAATATTTTATCGGAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGCTGGAATTTCTAA 3261 42.72 MNNGSARKSRPPPQNPSPAPPAKHQALSQEEDFVDEDVFLDENLLDEDALILRDIEERQALASRLSKWARPPLSQDYVSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTKEGHSVCCHVHGFEPYFYISCPPGMGPDDISIFHRTLEARMKEVNRNSKAPSFVRRIELVQKRSIMYYQQQASQSFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTKDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNNKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKSLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFINPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKSTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKSDKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERWNF 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68979321 69000294 - Tan0001389.1 Tan03g1272 746776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1272 1086 SUPERFAMILY DNA/RNA polymerases 553 961 IPR043502 -
Tan03g1272 1086 CDD POLBc_delta 567 960 - -
Tan03g1272 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Tan03g1272 1086 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Tan03g1272 1086 Pfam DNA polymerase family B, exonuclease domain 229 462 IPR006133 -
Tan03g1272 1086 FunFam DNA polymerase 641 693 - -
Tan03g1272 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Tan03g1272 1086 Gene3D - 294 512 IPR036397 GO:0003676(InterPro)
Tan03g1272 1086 FunFam DNA polymerase 814 970 - -
Tan03g1272 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Tan03g1272 1086 SMART polmehr3 293 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan03g1272 1086 FunFam DNA polymerase 90 265 - -
Tan03g1272 1086 Gene3D - 814 969 IPR042087 -
Tan03g1272 1086 FunFam DNA polymerase 333 567 - -
Tan03g1272 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 67 1062 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Tan03g1272 1086 CDD DNA_polB_delta_exo 290 518 - -
Tan03g1272 1086 Gene3D Helix hairpin bin 641 693 - -
Tan03g1272 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan03g1272 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan03g1272 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Tan03g1272 1086 NCBIfam DNA polymerase (pol2) 352 957 - -
Tan03g1272 1086 MobiDBLite consensus disorder prediction 1 28 - -
Tan03g1272 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Tan03g1272 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1272 Tan-Chr3:68979321 Tan08g0578 Tan-Chr8:5924752 1.10E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1272 K02327 - csv:101219332 2086.23