Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1282 ATGGCAATAGACCAGGGTGAGCTTAGCACTGAGCAGGTTCTGACAAGGGACATTCCATGGGAGACATACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCACAATTGTTGGATGATGATGGCCCAGCTTATGTTCGAGTATTTGTTAGCATTTTACGTGATATATTTAAGGAAGAAACAGTGGAATATGTTATAGCATTAATCGATGAAATGCTTACAGCAAACCCGAAAAGAGCAAGATTGTTCCATGATCATTCTCTTGAAAGCGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAGGGCAACTGGTTCGTACAAGAGAAGAGCTGTAAGATACTTGCTCTGATAGTGAGTGCTAGAAAAAAAACTCTTGAAGGCAGTTTTGCAAATGGTGATGCCTCGAACTCCAAGAAGAAAATTACAACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGCTGAAGGAACCAAAGGTCAGATCCTCCTTTGTCCAGGCAGATGGAGTGAAATTGCTCATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGATTCTATATGAAACATGTCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATTGAATTCTTGGCCACTTCTAGAACCCTTCCAAGACTCATCGATGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTGACCTTGAGGAATTTACTCTACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTCGGACTACCACAAATTGTTCAGAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAGTCAACTAGAAGAGGGGCTGAAAGATAATATCAAGAAGCTAAGCTCTTTTGACAAGTATAAGCAAGAAGTCCTTCTCGGCCATCTTGACTGGTCTCCTATGCACAAAGATGTAACTTTCTGGCGTGAAAACATTACAAGCTTCGAAGAGAACGACTTCAAGATATTGAGGGTCCTTATCACCATTCTGGACAGTTCAAGTGATCCAAGGGCTCTGGCAGTTGCTTGTTTTGATCTTTCCCAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTAATGAAACTGATGAATCATGAGAATGCTGAAGTTACCAAATATTCCCTCCTCTGCATTCAAAGGCTCTTCCTAGGTGCCAAGTATGCCAGCTTTCTGCAGGCTTAA 1365 42.2 MAIDQGELSTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVIALIDEMLTANPKRARLFHDHSLESEDAYEPFLRLLWKGNWFVQEKSCKILALIVSARKKTLEGSFANGDASNSKKKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQADGVKLLIPLISPASTQQSIQILYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVVILTLRNLLYKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALSQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVTFWRENITSFEENDFKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYSLLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 69087546 69097383 - Tan0004613.2 Tan03g1282 746786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1282 454 CDD VATPase_H 4 448 - -
Tan03g1282 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Tan03g1282 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
Tan03g1282 454 SMART arm_5 198 242 IPR000225 GO:0005515(InterPro)
Tan03g1282 454 FunFam V-type proton ATPase subunit H 345 446 - -
Tan03g1282 454 Pfam V-ATPase subunit H 9 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan03g1282 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan03g1282 454 Gene3D - 345 446 IPR038497 -
Tan03g1282 454 PIRSF V-ATP_synth_H 4 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan03g1282 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Tan03g1282 454 Gene3D - 7 333 IPR011989 -
Tan03g1282 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1281 Tan-Chr3:69087546 Tan03g1282 Tan-Chr3:69087546 8.60E-259 tandem
Tan03g1282 Tan-Chr3:69087546 Tan03g1283 Tan-Chr3:69087546 8.60E-259 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1282 K02144 - csv:101217015 855.129