Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1315 ATGGAGCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCAACACTCCGCCATGGACGATCACGATATCCTTCACCATCACGACCTTCATGAGCTCCGTTCTATTTGGCCATCGTTGTTGCCTTTTCAACCTCCCGATCCTCAACAACTGATCCCCACCTCCTCCACCCACCTGTTGATAGGTTATGCTGCCCCGAGTTCTGGGGCAGGTGATGATTCGGAAGAGCCAGAAGAAGAGCTTGGCGCCATGAAGGAGATGATGTACAAGATCGCTGCGATGCAGCCGGTGGACATCGACCCTTCAACCATTCGGAAGCCCAAGCGGCGAAACGTTCGGATTAGTGACGACCCGCAAAGCATCGCTGCCCGTCTCCGACGGGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCCGGAGGAACAAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAGTCAAGTCAGCCACAACAGCTGGACACTCGCGGTGGCGCCGCCGCCGGAGGGTGGCCGTTTACATTTCATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGGCCACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGATCTCCTTGTTAGAATTAACACTGACGTAAGGTTCTTCTTCAATATCATTACTCTTTAA 723 51.87 MEPHHLPNPSSHLQHSAMDDHDILHHHDLHELRSIWPSLLPFQPPDPQQLIPTSSTHLLIGYAAPSSGAGDDSEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPQQLDTRGGAAAGGWPFTFHKANGSTSSSTSMEATPAITPSGWKVCLADLLVRINTDVRFFFNIITL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 69651855 69653295 - Tan0003625.1 Tan03g1315 746819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1315 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 172 IPR036638 GO:0046983(InterPro)
Tan03g1315 240 Gene3D - 116 180 IPR036638 GO:0046983(InterPro)
Tan03g1315 240 FunFam BHLH transcription factor 116 179 - -
Tan03g1315 240 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 198 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1315 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983(InterPro)
Tan03g1315 240 CDD bHLH_AtIND_like 114 175 - -
Tan03g1315 240 SMART finulus 119 168 IPR011598 GO:0046983(InterPro)
Tan03g1315 240 Pfam Helix-loop-helix DNA-binding domain 122 163 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1315 Tan-Chr3:69651855 Tan05g1685 Tan-Chr5:49618688 3.20E-34 dispersed
Tan03g1315 Tan-Chr3:69651855 Tan01g4766 Tan-Chr1:113495252 2.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26960 PF00010 HLH 1.50E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1315 - - - 0.0