Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1327 ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGGTGTCCGATCTCGCTAGACGTGATGAAATCCCCTGTAAGTTTGTGTACCGGAGTGACTTATGATCGTTCCAGTATTCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCTACCATGCAGGTCCTTCACACCAAGGAGTTCGTCCCTAACCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCGCCACCGAGTCCACTCGCCCGATTCCTCCCCTGTTTCCGACTCGGTTTTGTCATCCGATCAACTTCTCGACCTCATCAAGCGTTTGGAGCTCGATCAATCTCGCGCTGATTCGCTTCCGCGCCTTGTCTCTTTTGCCGGTCAATCGGTGGAGAATCGGAGGCTGCTTTGTGGAATTGGCGGTCTCGTGCCGGTTCTTGTCGACCTTCTTGGCAATGTCGATGGCGGCGATTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATGGAGGATAAGGAGCGGTTTGTGAAGTCCGTGTTGAAGAGCGATCGTAATTGTCTTTCGTCTCTGCTTCTTGTTCTTCGGAAAGGAACCGTCGAATTGAAAATCTGTTCGGCGAATCTGTTAGAATATCTCGCAATCGACGCCGAGGCCAAGATTGTAATCGCGGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATAAACCCTGAGAACGATTCATCCCTAATCGAATCAGTTCTATCATGCCTAATTTCAATTTCAATGCCGAAACGGATCAAAATAAAATTAGTCCATCTCGGAGCGATAAAATCGGTGACGAAGCTTCTCTCGGAAGCGAACTCGAGTGCGAGCGTTTCGATGACGGAGAAGGTTCTGAAAGTTCTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACGGAGATCGGAGAGGACTCGGTGTGCGTGTCGACGATCGTACAGAAGGTGCTGAAGGTGTCGAACACGGCGACGGAGCACGCAGTGACGACGCTGTGGAGCGTGTGTTATCTGTTCAGAGACGAGAAGGCAGCGGAGGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGCTCGCCGCCGGTCCGGCAGATGGCGAGAGATTTGTTGAAGATTTTTCGGATCAATTCGAAATCGTGCCTGTCGAGTTACGATACGAAAACTACGCATATCATGCCCTGTTAA 1239 49.56 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLHTKEFVPNHNLHRLIQIWSDSLRHRVHSPDSSPVSDSVLSSDQLLDLIKRLELDQSRADSLPRLVSFAGQSVENRRLLCGIGGLVPVLVDLLGNVDGGDLVEQTVRLLHLIRSEMEDKERFVKSVLKSDRNCLSSLLLVLRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMQELLKLINPENDSSLIESVLSCLISISMPKRIKIKLVHLGAIKSVTKLLSEANSSASVSMTEKVLKVLETASTVREGRTEIGEDSVCVSTIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 69777159 69778837 - Tan0019741.1 Tan03g1327 746831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1327 412 SUPERFAMILY ARM repeat 122 394 IPR016024 -
Tan03g1327 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g1327 412 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Tan03g1327 412 Gene3D - 110 404 IPR011989 -
Tan03g1327 412 PANTHER WDSAM1 PROTEIN 7 411 IPR045185 GO:0061630(InterPro)
Tan03g1327 412 CDD RING-Ubox_PUB 11 63 IPR045210 -
Tan03g1327 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Tan03g1327 412 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g1327 412 SUPERFAMILY RING/U-box 6 78 - -
Tan03g1327 412 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4675 Tan-Chr1:112695814 Tan03g1327 Tan-Chr3:69777159 2.80E-31 dispersed
Tan03g1327 Tan-Chr3:69777159 Tan07g0873 Tan-Chr7:15125864 2.40E-106 dispersed
Tan03g1327 Tan-Chr3:69777159 Tan02g1715 Tan-Chr2:80165672 1.10E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1327 - - - 0.0