Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1430 ATGGCGAGCGAGTTTGGAGAATCAACAAGTGTGCCACATCAAAACCCCTCTCGGTCCAGTAACAATGACAGCACTAACAACGATACTGGCGATTTCGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGCCACCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATCTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGGTACCATCTGACCCAAGATTAACGAGATATCCTGGTATCGATGTTCCGAATCGACCTGCTGGGCAAAGGCCTCAAACAGCACCTCCCCCCGTTGCTAATGACTTTGCAAACTACGGGTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAACTTCACTTTGGCAACCGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATATCCTGATGCTACGGTTTATGGAACTACTTCTGGATACCCTTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCCACAACCGACGAGTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTAA 687 46.72 MASEFGESTSVPHQNPSRSSNNDSTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQSQECPVCKALVQEEKLVPLYGRGKVPSDPRLTRYPGIDVPNRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGYPDATVYGTTSGYPYAFNTFHGGHGHHFPQPTSRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 70712022 70713822 + Tan0000098.1 Tan03g1430 746934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1430 228 SMART ring_2 34 74 IPR001841 -
Tan03g1430 228 CDD RING-HC_AtRMA-like 32 76 - -
Tan03g1430 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Tan03g1430 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Tan03g1430 228 SUPERFAMILY RING/U-box 30 87 - -
Tan03g1430 228 MobiDBLite consensus disorder prediction 98 119 - -
Tan03g1430 228 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 IPR018957 GO:0046872(InterPro)
Tan03g1430 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 220 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Tan03g1430 228 MobiDBLite consensus disorder prediction 1 25 - -
Tan03g1430 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Tan03g1430 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1430 Tan-Chr3:70712022 Tan08g1518 Tan-Chr8:62883541 6.30E-24 dispersed
Tan02g1923 Tan-Chr2:87800081 Tan03g1430 Tan-Chr3:70712022 1.50E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1430 K10666 - csv:101205026 432.95