Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g1430 | ATGGCGAGCGAGTTTGGAGAATCAACAAGTGTGCCACATCAAAACCCCTCTCGGTCCAGTAACAATGACAGCACTAACAACGATACTGGCGATTTCGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGCCACCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATCTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGGTACCATCTGACCCAAGATTAACGAGATATCCTGGTATCGATGTTCCGAATCGACCTGCTGGGCAAAGGCCTCAAACAGCACCTCCCCCCGTTGCTAATGACTTTGCAAACTACGGGTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAACTTCACTTTGGCAACCGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATATCCTGATGCTACGGTTTATGGAACTACTTCTGGATACCCTTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCCACAACCGACGAGTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTAA | 687 | 46.72 | MASEFGESTSVPHQNPSRSSNNDSTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQSQECPVCKALVQEEKLVPLYGRGKVPSDPRLTRYPGIDVPNRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGYPDATVYGTTSGYPYAFNTFHGGHGHHFPQPTSRGQHADNVLKNLLLLVGVFVILALLWW | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 70712022 | 70713822 | + | Tan0000098.1 | Tan03g1430 | 746934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g1430 | 228 | SMART | ring_2 | 34 | 74 | IPR001841 | - | |
Tan03g1430 | 228 | CDD | RING-HC_AtRMA-like | 32 | 76 | - | - | |
Tan03g1430 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | IPR013083 | - | |
Tan03g1430 | 228 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - | |
Tan03g1430 | 228 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
Tan03g1430 | 228 | MobiDBLite | consensus disorder prediction | 98 | 119 | - | - | |
Tan03g1430 | 228 | Pfam | Zinc finger, C3HC4 type (RING finger) | 34 | 74 | IPR018957 | GO:0046872(InterPro) | |
Tan03g1430 | 228 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 10 | 220 | IPR045103 | GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
Tan03g1430 | 228 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Tan03g1430 | 228 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Tan03g1430 | 228 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 16 | 88 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1430 | Tan-Chr3:70712022 | Tan08g1518 | Tan-Chr8:62883541 | 6.30E-24 | dispersed | |
Tan02g1923 | Tan-Chr2:87800081 | Tan03g1430 | Tan-Chr3:70712022 | 1.50E-73 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g1430 | K10666 | - | csv:101205026 | 432.95 |