Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1476 ATGGCCGATTTCCAGACCTCGACTCAACGTGCCAAATGGATCTTGACTCCTCACGAGCTGATTGGCAGGTACAAAGCTGCTAACCAGAGAGCAATTGAAGCTCTGGAGAAGTTTGGAGCAGCACTAATGGAAGTCGATGCGGACGGATCATTGTCGTATCCAGACCCTCCGATAAATTCAAAAGATAATGCTGACAAACATTCTCGCCCCAAAGCTTTGAATATTGAAGAAGAGCAATTTATGCGAGTATTTTATGAAAACAAACTTCAAGAAGTATGCAACAATTTTCATTTTCCTCATAAAATCCAGGCAACAGCTCTTATATATTTTAAAAGATTCTACCTACAATGGTCCGTGATGCAACATAATCCCAAAAATGTGATGTTGACCTGCATTTATGCAGCTTGTAAGATAGAAGAAAATCACGTTTCAGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATTATTCTCAATTATGAGATGATAGTTTATCAGAGTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCGGTTGAAGGCTATGTACATGATATGGAGGAACTCTTCCACGAGAATGCTGAAATGCTTCAAATGCTGAAGGAAACAGCAACCTTAGAGGTTGATAAAATTATGTTAACAGATGCCCCACTTCTCTTCCCTCCTGGGCAGTTAGCATTGGCTGCATTGCGTAGATCAAATGAAGTTCACGGAGTGACTGACTTTGAAAGATACCTGGATAGTATTCTCTCTCGTCAGAATTCTGCACATACAATTTCCGAGCTCTATGAGCGTTTAAATTCAATTGACTCATGGGTTCATAGATATGCATTCCCTTCAGAAAAGGATTTAAAGCACATCAACAGAAAATTAAAATCTTGCTGGGGAGTGGGCTCCAATGACGAGAGTAAAAAAAGGGAGAAGAAGTCAAAGCACAAATCAAAGAAGAGTTCGAATGAAATGCAAAATATGCCTTTGCACAATTAG 999 39.74 MADFQTSTQRAKWILTPHELIGRYKAANQRAIEALEKFGAALMEVDADGSLSYPDPPINSKDNADKHSRPKALNIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHNPKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSVEGYVHDMEELFHENAEMLQMLKETATLEVDKIMLTDAPLLFPPGQLALAALRRSNEVHGVTDFERYLDSILSRQNSAHTISELYERLNSIDSWVHRYAFPSEKDLKHINRKLKSCWGVGSNDESKKREKKSKHKSKKSSNEMQNMPLHN 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71114639 71127717 + Tan0005449.1 Tan03g1476 746980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1476 332 CDD CYCLIN_AcCycH_rpt2 177 298 - -
Tan03g1476 332 MobiDBLite consensus disorder prediction 301 332 - -
Tan03g1476 332 FunFam cyclin-H1-1 63 175 - -
Tan03g1476 332 SUPERFAMILY Cyclin-like 179 300 IPR036915 -
Tan03g1476 332 SUPERFAMILY Cyclin-like 67 176 IPR036915 -
Tan03g1476 332 PANTHER CYCLIN 9 322 IPR043198 GO:0000079(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0070816(PANTHER)|GO:0070985(PANTHER)
Tan03g1476 332 Gene3D - 63 175 - -
Tan03g1476 332 SMART cyclin_7 87 168 IPR013763 -
Tan03g1476 332 FunFam Cyclin h 177 279 - -
Tan03g1476 332 Pfam Cyclin C-terminal domain 179 274 IPR031658 -
Tan03g1476 332 CDD CYCLIN_AcCycH_rpt1 3 174 - -
Tan03g1476 332 Gene3D - 177 279 - -
Tan03g1476 332 Pfam Cyclin, N-terminal domain 77 174 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1476 Tan-Chr3:71114639 Tan03g1478 Tan-Chr3:71114639 1.10E-189 dispersed
Tan03g1476 Tan-Chr3:71114639 Tan03g1477 Tan-Chr3:71114639 1.10E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1476 K06634 - csv:101220754 598.201