Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1548 ATGTCTGATCACAAATCAAGCTCCATGACCGACCAGCTCTCCAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCTGCTTTTGTGCTTTTTCTGTTTCTAATTTCTCTCTGGATTGCCTCCAAACGCTCTCGCAGGAAGATTTCTCACAGACCCACAATTCCAATCGACTCCAAAGAAATTCAAGAGATCAGAATCGATCATGCCCTCGCTCAAAACCAAGAACACAAGCCTAGTAGAGCCCATTTTCAGGTCGACCCTCTTCCCGAACCGGAGCCAATCCCCGGAATTGAGCGGCAAGCGTTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAACAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCCTATCCTGAGCGACTAGGTCGGTCTTCTTCCTCGCAGGGCAGTGGAGAGGGTCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGCCATTGGTACACTCTCAGGGAGCTTGAAGCTTCCACTAATGGTTTTGCCCCTGATAACGTAATCGGTGAAGGTGGGTATGGAATTGTTTACCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTTAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAACTTAGTTAGATTGCTTGGATACTGTGCTGAAGGAGCTCATAGGATGCTTGTATATGAGTATATAAATAACGGGAACTTGGAACAATGGCTTCATGGGGATGTAGGATCTTTCAGTCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCGAAGGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTTGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAACAGCTATATTACAACCCGAGTTATGGGGACATTTGGCTATGTAGCACCAGAATATGCAAGTACTGGCATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGAAGGAACCCTGTTGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAGAGAATGGTCAGTAATAGGAATCCAGAGGGCGTATTGGATCCAAAGCTCTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCGCTTCTTGTTGCATTACGCTGCGTGGACCCAAATGCTCAGAAGCGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAACTCACATTCAGATAATGTGAAGGATGGCTTAAATGAGAGGCAGGCGACAGAATTAGGTGGCAGCAATGTGGATGAACAATGA 1509 45.33 MSDHKSSSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRRKISHRPTIPIDSKEIQEIRIDHALAQNQEHKPSRAHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATFKGDRKAGKDPENSHSDNVKDGLNERQATELGGSNVDEQ 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71788868 71791462 - Tan0019898.1 Tan03g1548 747052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1548 502 Pfam Protein kinase domain 190 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g1548 502 PANTHER OS01G0323000 PROTEIN 7 490 IPR052232 -
Tan03g1548 502 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524(InterPro)
Tan03g1548 502 ProSiteProfiles Protein kinase domain profile. 186 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g1548 502 MobiDBLite consensus disorder prediction 464 487 - -
Tan03g1548 502 Gene3D Transferase(Phosphotransferase) domain 1 262 472 - -
Tan03g1548 502 MobiDBLite consensus disorder prediction 464 502 - -
Tan03g1548 502 FunFam Probable serine/threonine-protein kinase At1g01540 166 261 - -
Tan03g1548 502 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Tan03g1548 502 Gene3D Phosphorylase Kinase; domain 1 167 261 - -
Tan03g1548 502 CDD STKc_IRAK 192 458 - -
Tan03g1548 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1548 502 SMART serkin_6 186 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g1548 502 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1548 Tan-Chr3:71788868 Tan10g0239 Tan-Chr10:2138535 1.20E-168 dispersed
Tan11g1832 Tan-Chr11:21409204 Tan03g1548 Tan-Chr3:71788868 3.10E-45 dispersed
Tan02g1799 Tan-Chr2:83362068 Tan03g1548 Tan-Chr3:71788868 2.20E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67335 PF00069 Pkinase 5.20E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1548 - - - 0.0