Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g1550 | ATGGCTTCTTCCAATGGTCACCAGGGAACTTCCCAAGTTAATGAACATGGCGAAATTGGGCACAAGTCTCTCTTACAGAGCGATGCTCTTTATCAATACATACTTGAAACCAGTGTGTATCCTAGAGAGAGTGAAGCTCTGAAAGAACTCCGAGAATTAACCGCCAAACACCCATGGAACATCATGACAACGAGTGCAGATGAAGGGCAGCTTCTGAGCATGCTTGTTAAGGTCATAAACGCCAAAAACACAATGGAAATTGGCGTTTTCACTGGCTATTCTCTGCTTGCCACTGCCCTCGCTCTTCCCCATGATGGCAAGATACTGGCAATGGATATCAATCGTGAAAACTACGAATTGGGTCTCCCTATAATTCAAAAGGCTGGTGTTGCTCATAAGATTGATTTCAAGGAAGGCCCTGCCCTGCCTGTTCTCGACCAAATGCTCCAACAAGGAACATATAATGGGACGTTTGATTTTATCTTTGTGGATGCCGATAAGAATAATTACTTGAATTACCATAAGAGGGTTATTGATCTTGTGAAGATTGGTGGTCTGATCGGCTACGACAACACTCTGTGGGCTGGATCAGTGGCGGCGCCGCCGGATGCCCCTCTTAAAAAGTACGTTAGGTATTTTAGAGATTTTGTGTTGGAGTTCAATGAAGTATTGGCGGTTGATCCTAGGGTTGAGATTTGCCAACTTGTGGTGGGAGATGGGATTACTTTGTGTCGTCGTATCAGCTAA | 747 | 44.71 | MASSNGHQGTSQVNEHGEIGHKSLLQSDALYQYILETSVYPRESEALKELRELTAKHPWNIMTTSADEGQLLSMLVKVINAKNTMEIGVFTGYSLLATALALPHDGKILAMDINRENYELGLPIIQKAGVAHKIDFKEGPALPVLDQMLQQGTYNGTFDFIFVDADKNNYLNYHKRVIDLVKIGGLIGYDNTLWAGSVAAPPDAPLKKYVRYFRDFVLEFNEVLAVDPRVEICQLVVGDGITLCRRIS | 248 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 71824513 | 71825652 | + | Tan0007142.1 | Tan03g1550 | 747054 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g1550 | 248 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 27 | 246 | IPR029063 | - | |
| Tan03g1550 | 248 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 23 | 247 | IPR002935 | GO:0008171(InterPro) | |
| Tan03g1550 | 248 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 16 | 248 | - | - | |
| Tan03g1550 | 248 | CDD | AdoMet_MTases | 89 | 187 | - | - | |
| Tan03g1550 | 248 | Pfam | O-methyltransferase | 36 | 247 | IPR002935 | GO:0008171(InterPro) | |
| Tan03g1550 | 248 | Gene3D | Vaccinia Virus protein VP39 | 22 | 248 | IPR029063 | - | |
| Tan03g1550 | 248 | PANTHER | O-METHYLTRANSFERASE-RELATED | 20 | 247 | IPR050362 | GO:0008757(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g0688 | Tan-Chr1:6548836 | Tan03g1550 | Tan-Chr3:71824513 | 3.80E-112 | dispersed | |
| Tan03g1550 | Tan-Chr3:71824513 | Tan04g0054 | Tan-Chr4:483406 | 6.70E-64 | dispersed | |
| Tan02g0912 | Tan-Chr2:10603751 | Tan03g1550 | Tan-Chr3:71824513 | 3.20E-114 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g1550 | K00588 | - | vvi:100243978 | 421.779 |