Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1562 ATGTGGGATCTGAACGATTGTCCAGATGAGAGGGAAGAGGAGGAATCGGAAGCTTGTTCGATTGAGGGAGAAGATGAGAAAGGGAAAAGGGTGGGATCGGTTTCCAATTCCAGTTCTTCGGCTGTTGTTCTGGAGGATGGATCCGATGACGAAGCACCCATGCAAATTGACGCAACCGGCCCCGTTACTCGCCAGTTTTTCCCACTTGACGACACTCAAATCTCTGCTACTACTTCTTCCTTCCCTCGGGCTCATTGGGTTGGTGTCAAATTTGGACATCCCGATCCTCTCGCCGCTGCTAATTCCATCAAGCCCACCGACCTCTCCCAGCCCATTAAAAAGAGCCGCCGCGGTCCCAGGTCTCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGCTGGGAATCACATATTTGGGATTGTGGAAAGCAAGTTTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTCGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGATTTAAAACAGATGGGGAATCTAACGAAGGAGGAATTTGTACATGTACTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGTTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACGGAAATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATTTACGAGAATGAACTGAATCCGACAACTGATTCAACTGGAAATTTGGCGGATCACAATCTTGATTTGAGTTTGGGAAATTCAAGCTCAAAGCAAAACGACAGCCCAAATGCCAATTCGATAGATCCACATCATTCTTCTTCAGCTTCTCTATCGATGGAAGGTGACTGGCAACAACGCAATCAAGGATTTAGACCTCCTCAGCTAAATTTGCTGCCAGAGTCAAGTGGAGGAGGAGGGGGTGGACACAAAAATTACAATGCACAGAGAAGAAATAGTAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCAGCTTCATTTGAAATGCAAAGACACGGCCAATTCAACCGGCAGGCGGGTGCTGGAGATCAGCCCCACTCCCAGATATTGGTTCACAATCACAATCCAAGCCTCAATTATCAAATTCAGTTTAGGGGCAGCAGTAATGGAGGCCGAATAGGAAGTGATCTATCACTGTCTCTAAGTGATCATAATCAACTTCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCTCACCCCAGATTAGACCTTCCAAAAATTGGCTGCAGAAGAATGGGTTTCACTGTCTTATGAGACCCTCCTGA 1479 47.4 MWDLNDCPDEREEEESEACSIEGEDEKGKRVGSVSNSSSSAVVLEDGSDDEAPMQIDATGPVTRQFFPLDDTQISATTSSFPRAHWVGVKFGHPDPLAAANSIKPTDLSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSTGNLADHNLDLSLGNSSSKQNDSPNANSIDPHHSSSASLSMEGDWQQRNQGFRPPQLNLLPESSGGGGGGHKNYNAQRRNSRYLESETMQLLSQTHIQSPASFEMQRHGQFNRQAGAGDQPHSQILVHNHNPSLNYQIQFRGSSNGGRIGSDLSLSLSDHNQLLQSGPSQVLATAAASSGFSPQIRPSKNWLQKNGFHCLMRPS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71856120 71859539 - Tan0003996.1 Tan03g1562 747066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1562 492 MobiDBLite consensus disorder prediction 1 53 - -
Tan03g1562 492 PRINTS Ethylene responsive element binding protein signature 256 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 CDD AP2 125 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 FunFam AP2-like ethylene-responsive transcription factor 216 276 - -
Tan03g1562 492 FunFam AP2-like ethylene-responsive transcription factor 124 183 - -
Tan03g1562 492 MobiDBLite consensus disorder prediction 281 363 - -
Tan03g1562 492 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677(InterPro)
Tan03g1562 492 ProSiteProfiles AP2/ERF domain profile. 125 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 SMART rav1_2 125 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 SMART rav1_2 217 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 Gene3D AP2/ERF domain 216 275 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 CDD AP2 216 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 MobiDBLite consensus disorder prediction 98 125 - -
Tan03g1562 492 MobiDBLite consensus disorder prediction 281 345 - -
Tan03g1562 492 Pfam AP2 domain 125 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 Pfam AP2 domain 216 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1562 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 341 - -
Tan03g1562 492 SUPERFAMILY DNA-binding domain 216 276 IPR016177 GO:0003677(InterPro)
Tan03g1562 492 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1562 Tan-Chr3:71856120 Tan05g1633 Tan-Chr5:42524991 1.90E-150 dispersed
Tan03g1562 Tan-Chr3:71856120 Tan08g1929 Tan-Chr8:71547037 2.60E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26997 PF00847 AP2 3.30E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1562 K09284 - csv:101214724 686.026