Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1563 ATGGACGGCGGAGGAGAGGCATGCCGAGAGGGTACTAGAAAGAGAGGGGTCGACAATCAGAGGCCGTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCTTACGATACGGCCGTCTTTTACCTCAGAGGCCCCTCTGCCAGGCTTAATTTTCCCGAGTTGTTAGCCGGGGAAGGCCGCGGAATTAGCGGCGGCGGTGGCAGTGGCAGTGGTGGCGACATGTCGGCGGCTTCAATACGGAAGAAAGCGACGGAGGTGGGGGCTCGAGTGGATGCTCTGGAGAGTTCGTTAGGTCAACACCAACACAGTCACAACAATCGGAGCCATCTTCCACACGCATCGACTTCTCCGCCAGAGATTAAAGGGTGCGGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAACCCGATGGGGAGTTCGAGTGGGAGAGACAGTGA 546 56.96 MDGGGEACREGTRKRGVDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISGGGGSGSGGDMSAASIRKKATEVGARVDALESSLGQHQHSHNNRSHLPHASTSPPEIKGCGGFLDRVDLNKLPDPEEEDEEPDGEFEWERQ 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71896518 71897608 - Tan0019835.1 Tan03g1563 747067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1563 181 MobiDBLite consensus disorder prediction 1 21 - -
Tan03g1563 181 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677(InterPro)
Tan03g1563 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 171 - -
Tan03g1563 181 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Tan03g1563 181 CDD AP2 23 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 Pfam AP2 domain 23 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 MobiDBLite consensus disorder prediction 123 140 - -
Tan03g1563 181 MobiDBLite consensus disorder prediction 164 181 - -
Tan03g1563 181 MobiDBLite consensus disorder prediction 85 109 - -
Tan03g1563 181 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1563 181 MobiDBLite consensus disorder prediction 123 181 - -
Tan03g1563 181 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1563 Tan-Chr3:71896518 Tan10g1940 Tan-Chr10:62178984 9.70E-20 dispersed
Tan05g1640 Tan-Chr5:42919343 Tan03g1563 Tan-Chr3:71896518 2.90E-50 transposed
Tan09g1046 Tan-Chr9:62683529 Tan03g1563 Tan-Chr3:71896518 1.50E-18 transposed
Tan11g1299 Tan-Chr11:11128826 Tan03g1563 Tan-Chr3:71896518 5.90E-18 transposed
Tan02g1566 Tan-Chr2:72209084 Tan03g1563 Tan-Chr3:71896518 8.60E-18 transposed
Tan01g4750 Tan-Chr1:113328167 Tan03g1563 Tan-Chr3:71896518 1.60E-39 wgd
Tan02g1788 Tan-Chr2:83138908 Tan03g1563 Tan-Chr3:71896518 3.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26998 PF00847 AP2 2.50E-11 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1563 K09286 - csv:101214481 249.98