Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1575 ATGGATGATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGGCAAAATAGTAAAGGAGACCATTTGACATCTATTTTATCTACGTCTGGAATATCTTCTTGGGCTAAGAGTTTTAGAAATTCACAACCACCTGAAGCAGCAGAAAATGACTCTAAGGCAGGAAATGGTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAACGCAATCTGGTGTTTTTGAATCATTCACGAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCTCAGAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTATTTGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAGATTTTTTGAATCTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCGTGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTTTTCCAATCATCAGCAGAGGCAATTGATTATTACAATCAGAAAAGATGCGTAGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGATATGTCAAATATTTTGAGCACATTTCAACACATTTCAACGGAAATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCAACAAAAAACCATCCAAAGACAAAGAATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGGGAGCCTGGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTTCATGACCGACATGGAGATTTTTATTGTTGGTTAAATACAACAATGACAGAAAACAAAGTATTATTAAGTGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACCCCTGGATTCCAGGTCGAAGTAGTGATGATAGACTATAATGGTACTTTGCCAACACGATTGAAAACTGATTCTGATGGCAAAGGATCTGATCGTCGCTCCATTCATGATCGGGCATCAGATCATGAAGCCGCACAATCCAGCAAAAACAAAATTCCTGAGGGTGAAGAAAATGATGACGATGTATTCTCTGATAGTGATGAAGAAAATTGTGACACAAAAACCAGTCTAGCTCAATCAACTTCTGGAAATGCAAAAGCTGAACATTCATCAACAGCTATTGCTTCTGAAAAAATTGGGAGCTTAGCGCATGAAACTAATCATTTGTCACTCGGGAACAGGAAAACCTACAAATCAATGCTCCAAAGACTCAAACTTTGA 1686 39.26 MDDGTSNSSTQSAVNNPAPTVHRQNSKGDHLTSILSTSGISSWAKSFRNSQPPEAAENDSKAGNGGMSAIARFSSGFGLRIPSMSPVRDDGVADTKSATQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGLFGFLEGFYRNHMEEVIRFFESHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQSSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFEHISTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKNLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRLKTDSDGKGSDRRSIHDRASDHEAAQSSKNKIPEGEENDDDVFSDSDEENCDTKTSLAQSTSGNAKAEHSSTAIASEKIGSLAHETNHLSLGNRKTYKSMLQRLKL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72002527 72007906 + Tan0010329.1 Tan03g1575 747079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1575 561 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Tan03g1575 561 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Tan03g1575 561 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Tan03g1575 561 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Tan03g1575 561 MobiDBLite consensus disorder prediction 459 492 - -
Tan03g1575 561 SMART PTEN_C2_2 319 447 IPR014020 -
Tan03g1575 561 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Tan03g1575 561 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 528 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Tan03g1575 561 MobiDBLite consensus disorder prediction 508 527 - -
Tan03g1575 561 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Tan03g1575 561 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Tan03g1575 561 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 143 309 IPR029021 -
Tan03g1575 561 MobiDBLite consensus disorder prediction 1 64 - -
Tan03g1575 561 CDD PTP_PTEN 145 308 IPR045101 GO:0016791(InterPro)
Tan03g1575 561 MobiDBLite consensus disorder prediction 1 57 - -
Tan03g1575 561 MobiDBLite consensus disorder prediction 454 527 - -
Tan03g1575 561 Pfam PTEN2, C2 domain 321 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1575 Tan-Chr3:72002527 Tan03g1577 Tan-Chr3:72002527 0.00E+00 dispersed
Tan03g1575 Tan-Chr3:72002527 Tan03g1576 Tan-Chr3:72002527 0.00E+00 tandem
Tan03g1590 Tan-Chr3:72130673 Tan03g1575 Tan-Chr3:72002527 0.00E+00 transposed
Tan02g0941 Tan-Chr2:11624401 Tan03g1575 Tan-Chr3:72002527 1.30E-188 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1575 K01110 - csv:101213277 982.245