Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1578 ATGGATGATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGGCAAAATAGTAAAGGAGACCATTTGACATCTATTTTATCTACGTCTGGAATATCTTCTTGGGCTAAGAGTTTTAGAAATTCACAACCACCTGAAGCAGCAGAAAATGACTCTAAGGCAGGAAATGGTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAACGCAATCTGGTGTTTTTGAATCATTCACGAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCTCAGAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTATTTGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAGATTTTTTGAATCTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCGTGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTTTTCCAATCATCAGCAGAGGCAATTGATTATTACAATCAGAAAAGATGCGTAGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTGTTAGCCATTCAGTTCCTTGTTTTGTGTGTGTGTGTGTTTTTAACTTTATTCTGATGCCTCTTTACTTGATACAGAGATATGTCAAATATTTTGAGCACATTTCAACACATTTCAACGGAAATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCAACAAAAAACCATCCAAAGACAAAGAATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGGGAGCCTGGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTTCATGACCGACATGGAGATTTTTATTGTTGGTTAAATACAACAATGACAGAAAACAAAGTATTATTAAGTGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACCCCTGGATTCCAGGTCGAAGTAGTGATGATAGACTATAATGGTACTTTGCCAACACGATTGAAAACTGATTCTGATGGCAAAGGATCTGATCGTCGCTCCATTCATGATCGGGCATCAGATCATGAAGCCGCACAATCCAGCAAAAACAAAATTCCTGAGGGTGAAGAAAATGATGACGATGTATTCTCTGATAGTGATGAAGAAAATTGTGACACAAAAACCAGTCTAGCTCAATCAACTTCTGGAAATGCAAAAGCTGAACATTCATCAACAGCTATTGCTTCTGAAAAAATTGGGAGCTTAGCGCATGAAACTAATCATTTGTCACTCGGGAACAGGAAAACCTACAAATCAATGCTCCAAAGACTCAAACTTTGA 1761 39.13 MDDGTSNSSTQSAVNNPAPTVHRQNSKGDHLTSILSTSGISSWAKSFRNSQPPEAAENDSKAGNGGMSAIARFSSGFGLRIPSMSPVRDDGVADTKSATQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGLFGFLEGFYRNHMEEVIRFFESHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQSSAEAIDYYNQKRCVDGKALVLPSQIVSHSVPCFVCVCVFNFILMPLYLIQRYVKYFEHISTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKNLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRLKTDSDGKGSDRRSIHDRASDHEAAQSSKNKIPEGEENDDDVFSDSDEENCDTKTSLAQSTSGNAKAEHSSTAIASEKIGSLAHETNHLSLGNRKTYKSMLQRLKL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72002527 72007906 + Tan0010329.4 Tan03g1578 747082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1578 586 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Tan03g1578 586 ProSiteProfiles C2 tensin-type domain profile. 346 473 IPR014020 -
Tan03g1578 586 CDD PTP_PTEN 145 333 IPR045101 GO:0016791(InterPro)
Tan03g1578 586 Pfam PTEN2, C2 domain 346 474 - -
Tan03g1578 586 ProSiteProfiles Phosphatase tensin-type domain profile. 135 339 IPR029023 -
Tan03g1578 586 MobiDBLite consensus disorder prediction 479 552 - -
Tan03g1578 586 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 288 IPR029021 -
Tan03g1578 586 Gene3D Protein tyrosine phosphatase superfamily 120 342 IPR029021 -
Tan03g1578 586 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 312 - -
Tan03g1578 586 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Tan03g1578 586 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Tan03g1578 586 MobiDBLite consensus disorder prediction 1 64 - -
Tan03g1578 586 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 301 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Tan03g1578 586 MobiDBLite consensus disorder prediction 484 517 - -
Tan03g1578 586 MobiDBLite consensus disorder prediction 533 552 - -
Tan03g1578 586 MobiDBLite consensus disorder prediction 1 57 - -
Tan03g1578 586 SMART PTEN_C2_2 344 472 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1576 Tan-Chr3:72002527 Tan03g1578 Tan-Chr3:72002527 0.00E+00 dispersed
Tan03g1578 Tan-Chr3:72002527 Tan03g1590 Tan-Chr3:72130673 0.00E+00 dispersed
Tan03g1577 Tan-Chr3:72002527 Tan03g1578 Tan-Chr3:72002527 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1578 K01110 - csv:101213277 968.378