Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1649 ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGCTGCAGCGAGTCCTGTATTCTCCGCCCTTGCTTGCAGTGGATTGACACCTCCGAAGCCCAAGGCCACGCTACTGTCTTCGTCGCTAAGTTCTTCGGCCGCGCCGGCCTTATGTCCTTCATTTCCGCCGTCCCTCAATCTCAGAGACCTTCTCTGTTTCAGTCTTTGTTGTTTGAAGCCTGCGGACGCACCGTCAATCCGGTCAACGGCGCTGTTGGCCTTCTCTGGACTGGCAACTGGCATATCTGTCAGGCCGCCGTCGAGACTGTCTTGCGAGGCGGTACGTTGCGGCCCATGAACGAATTCCTCGCCGCTGGATCTCCCAATCCGGCCTCCGACGACACTTCCGAGGCTGAAGTCGCCTGCACCGACATGTGGAAGCTTCGAGATTCTTATCCCAATTCTCGATTCTCCAACTCCCGATCCAGGCTCTCCCCCAAACGCAAGCGATCCGACGAATCCACCAAGAACCAACTGAACGACCTAGATCTCCGCTTGACCCCCACTTTTCCGGCCAAATCAACCCGGCGGGCCGCTACTCCCTCCATGAACTCCGAGGAATCCGAGACCACTACGTGCTTCGAAAGCGGCGGCCTGGGAGAACATCATCATCATCATCATCCTCACTACTATACAGAAGAACCGTCCGCTGAACGGAAGCTTCTGAACTTATTTGTATAA 714 55.88 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNPASDDTSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSDESTKNQLNDLDLRLTPTFPAKSTRRAATPSMNSEESETTTCFESGGLGEHHHHHHPHYYTEEPSAERKLLNLFV 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72595636 72596895 - Tan0018127.1 Tan03g1649 747153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1649 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tan03g1649 237 MobiDBLite consensus disorder prediction 209 227 - -
Tan03g1649 237 MobiDBLite consensus disorder prediction 144 227 - -
Tan03g1649 237 MobiDBLite consensus disorder prediction 156 170 - -
Tan03g1649 237 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Tan03g1649 237 MobiDBLite consensus disorder prediction 184 206 - -
Tan03g1649 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 207 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1649 Tan-Chr3:72595636 Tan04g2009 Tan-Chr4:71656633 4.30E-44 dispersed
Tan01g4707 Tan-Chr1:112959317 Tan03g1649 Tan-Chr3:72595636 1.90E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27002 PF03195 LOB 2.00E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1649 - - - 0.0