Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1662 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGAACAATCTTACAACTCCAGTAGAACCAATTCTAGCAGCTCTAGATCTTCAAGACAAAACCAATATCACTACCATCAACACGAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTATAATCCGTACCATCCACACCCACCTTCCACTGCCACCGCCACCCCCACCGCCACCACCCCAACTCCGATTGATCAATTCTCATTCGTCTCCCCATCCCCGGACTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTAGAAACCGCCAGGGCTATTTCTGACAGGAACAGTGCTCGCGTTCAGCAACTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTCGCATCCTATTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATCGGGCTTTGGCCTCCGCCTCGGAGAAAACATGCTCCTTCGAATCAACTAGGAAAACGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTGATTGAAGCTTTAGAAGGCGAATCGAAGCTACACATAATCGATATCAGTAATACGTATTGTACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCCACTCGTACCGACGATACGCCACACCTCCGCCTCACGACGGTCGTCATCACCAAGCCCGGCTGTGGGACCGGAGTCGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTGCAAGAATGGAAAAGTTTGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTCGCGAAATTAGACATCAAAGAAGACGAGGCACTTGCCGTCAACTGCGTCGGAGCCTTACGTTCCGTGGCGGCGGTTAATAACCGCCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGAGGGTTCCAAGAATGTTTGCGATGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACGAGCAACGAGCGGTTGATACTTGAAAGAGCGGCAGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCGGCGGAGTCGGTGGAGAGGCGGGAATCAGCGGCGCGGTGGGCACAGCGGCTGCATGGAAGCGGTTTTGGCCCGGTGACGTTCAGCGACGAAGTATGTGACGACGTAAGGGCACTGTTGAGGAGGTACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1473 51.39 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHYHQHEDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATATPTATTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKTMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGCGTGVAASQKVMKEIGARMEKFARLMGVPFKFHTLYHSGDLSELDFAKLDIKEDEALAVNCVGALRSVAAVNNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFLRGFQECLRWFRVYFETLDESFTRTSNERLILERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72716270 72718626 - Tan0003749.1 Tan03g1662 747166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1662 490 MobiDBLite consensus disorder prediction 14 37 - -
Tan03g1662 490 MobiDBLite consensus disorder prediction 14 32 - -
Tan03g1662 490 Pfam GRAS domain family 111 489 IPR005202 -
Tan03g1662 490 ProSiteProfiles GRAS family profile. 99 489 IPR005202 -
Tan03g1662 490 MobiDBLite consensus disorder prediction 56 83 - -
Tan03g1662 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 488 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1648 Tan-Chr3:72577461 Tan03g1662 Tan-Chr3:72716270 3.90E-44 dispersed
Tan03g1662 Tan-Chr3:72716270 Tan05g1663 Tan-Chr5:46199895 6.50E-143 dispersed
Tan03g1662 Tan-Chr3:72716270 Tan05g1662 Tan-Chr5:46198852 2.90E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27005 PF03514 GRAS 6.80E-104 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1662 K27743 - csv:101204711 852.047