Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1673 ATGGAAAGGTTTTTGGAGGAGAATTTTGGGGGCATCAAACCGAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTGGTCAAGAACCCTAAAAGGAGGTTTCGCTTTACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAATAATCAGGAGAAGTTAAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATACAAGGTGTGCAACCAAGTGACTATACCGTTCCGGCGGAAGTCAAGGCTGCAGGTTTTCATATTTGTGGTGATGAACTCGGGTCTATTGTTGAAGGCCACGATCCAAAGAAGTTCAAATATCATGGTGGTGTCGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAACTGGGCTTAGTGGTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGCGAACAGAGGAGTTTTTTGGTGTTCGTTTGGGAGGCTCTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTTGTCTCTTTGGTAGTTGGCATAATAACTGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTCACAGCAACTAGTGATTATCGACAGTCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAAGTTACAAGGAATGGTTATAGACAGAAAATGTCAATCTACGATTTACTTCCTGGAGATATTGTACACTTGTCTATTGGGGATCAAGTTCCTGCAGATGGACTGTTTGTTTCAGGGTTTTCTGTGTTGATTGATGAATCAAGTTTGACTGGAGAAAGTGAACCAGTGATGGTGAGTGCAGAAAACCCTTATCTTCTTTCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCTATCATCACTTTCGCTGTGTTGGTTCAAGGATTGGTTAGCCGTAAACTCCGAGAAGGGACTCAATGGAGCTGGTCTGGAGATGACGCATTGGAGATATTGGAATTCTTTGCTGTTGCAGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGCAGTGACAAAACTGGAACAATCACTACAAATCGCATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCAAGTAATAATCCATCAAGTTTCTGCTCTGACCTTCCAGCCTCTGTTGTCAAACTTCTGCTACAATCAATATTCAACAACACTGGGGGAGAAGTTGTAATCAACAAAGATGGCAAACGTGAGCTGTTGGGCACTCCGACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTTGGTGGGAATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAACTCTTTGAAAAAGCGGATGGGTGTCGTCCTACAATTTCCTGAAGGTGGTTTCCGAGCTCACACTAAAGGTGCTTCAGAAATAGTATTGGCTGCCTGTGACAAGGTGGTCAACTCGAGTGGTGATGTTGTTCCTTTAGATGAAGCTTCCATCAAACATCTCAATGTTATTATCAATCAATTTGCTGGTGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGCCAATGATCCTATTCCCGTTTCTGGTTATACCTGCATTGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCGGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACCGATGATGGCATAGCCATCGAGGGTCCAGATTTCAGAGAGAAGACTCAAGAGGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCTTCACCTCTCGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTCGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAACGATGCTCCTGCACTTCACGAAGCAGATATTGGACTAGCAATGGGCATCGCTGGAACTGAGGTGGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATCGTGACTGTTGGAAAATGGGGTCGTTCCGTCTACATAAATATTCAAAAATTTGTGCAATTCCAGCTGACTGTCAACATAGTGGCGTTGATCGTGAACTTCTCTTCAGCTTGTTTGACAGGTAATGCACCTCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGACACACTTGGAGCTTTGGCTCTCGCCACTGAGCCTCCAAATGATGACTTGATGAAGCGCTTACCTGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGCCAGTCCATATATCAGTTCTTAGTGATATGGTTTTTACAGGCCAAAGGGAAAGCAACGTTTGGTCTAGACGGCCCTGACTCTGATCTGATACTGAATACCCTCATCTTCAATTGCTTTGTGTTCTGTCAGGTACTACACACTTCTTGTTTCTAA 2829 43.73 MERFLEENFGGIKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPAEVKAAGFHICGDELGSIVEGHDPKKFKYHGGVEGIAQKLCTSTTTGLSGDADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSRKLREGTQWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESSNNPSSFCSDLPASVVKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGNFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVVNSSGDVVPLDEASIKHLNVIINQFAGEALRTLCLAYMELENGFSANDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRLPVGRRGSFISNVMWRNILGQSIYQFLVIWFLQAKGKATFGLDGPDSDLILNTLIFNCFVFCQVLHTSCF 942
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 72773843 72778875 + Tan0007464.2 Tan03g1673 747177
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1673 942 Gene3D - 168 908 - -
Tan03g1673 942 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Tan03g1673 942 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Tan03g1673 942 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Tan03g1673 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 938 IPR023298 -
Tan03g1673 942 Pfam Cation transport ATPase (P-type) 513 591 - -
Tan03g1673 942 SFLD p-type atpase 435 805 IPR044492 -
Tan03g1673 942 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
Tan03g1673 942 NCBIfam HAD-IC family P-type ATPase 393 479 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 NCBIfam HAD-IC family P-type ATPase 205 375 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 NCBIfam HAD-IC family P-type ATPase 719 834 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 FunFam Calcium-transporting ATPase 770 941 - -
Tan03g1673 942 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 938 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Tan03g1673 942 Pfam haloacid dehalogenase-like hydrolase 641 767 - -
Tan03g1673 942 SUPERFAMILY HAD-like 452 858 IPR036412 -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Tan03g1673 942 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Tan03g1673 942 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1673 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Tan03g1673 942 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Tan03g1673 942 Gene3D - 463 657 IPR023299 GO:0000166(InterPro)
Tan03g1673 942 Gene3D - 17 77 - -
Tan03g1673 942 Pfam Cation transporting ATPase, C-terminus 838 938 IPR006068 -
Tan03g1673 942 FunFam Calcium-transporting ATPase 463 657 - -
Tan03g1673 942 Pfam E1-E2 ATPase 236 432 - -
Tan03g1673 942 Gene3D - 450 798 IPR023214 -
Tan03g1673 942 PANTHER CATION TRANSPORTING ATPASE 77 939 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Tan03g1673 942 FunFam Calcium-transporting ATPase 646 798 - -
Tan03g1673 942 FunFam Calcium-transporting ATPase 17 77 - -
Tan03g1673 942 Gene3D - 140 336 - -
Tan03g1673 942 SFLD Haloacid Dehalogenase 435 805 - -
Tan03g1673 942 FunFam Calcium-transporting ATPase 216 336 - -
Tan03g1673 942 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4694 Tan-Chr1:112877771 Tan03g1673 Tan-Chr3:72773843 0.00E+00 dispersed
Tan03g1673 Tan-Chr3:72773843 Tan03g1675 Tan-Chr3:72773843 0.00E+00 dispersed
Tan03g1672 Tan-Chr3:72773843 Tan03g1673 Tan-Chr3:72773843 0.00E+00 tandem
Tan03g1673 Tan-Chr3:72773843 Tan03g1674 Tan-Chr3:72773843 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1673 K01537 - csv:101212315 1757.65