Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1675 ATGGAAAGGTTTTTGGAGGAGAATTTTGGGGGCATCAAACCGAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTGGTCAAGAACCCTAAAAGGAGGTTTCGCTTTACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAATAATCAGGAGAAGTTAAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATACAAGGTGTGCAACCAAGTGACTATACCGTTCCGGCGGAAGTCAAGGCTGCAGGTTTTCATATTTGTGGTGATGAACTCGGGTCTATTGTTGAAGGCCACGATCCAAAGAAGTTCAAATATCATGGTGGTGTCGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAACTGGGCTTAGTGGTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGCGAACAGAGGAGTTTTTTGGTGTTCGTTTGGGAGGCTCTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTTGTCTCTTTGGTAGTTGGCATAATAACTGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTCACAGCAACTAGTGATTATCGACAGTCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAAGTTACAAGGAATGGTTATAGACAGAAAATGTCAATCTACGATTTACTTCCTGGAGATATTGTACACTTGTCTATTGGGGATCAAGTTCCTGCAGATGGACTGTTTGTTTCAGGGTTTTCTGTGTTGATTGATGAATCAAGTTTGACTGGAGAAAGTGAACCAGTGATGGTGAGTGCAGAAAACCCTTATCTTCTTTCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCTATCATCACTTTCGCTGTGTTGGTTCAAGGATTGGTTAGCCGTAAACTCCGAGAAGGGACTCAATGGAGCTGGTCTGGAGATGACGCATTGGAGATATTGGAATTCTTTGCTGTTGCAGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGCAGTGACAAAACTGGAACAATCACTACAAATCGCATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCAAGTAATAATCCATCAAGTTTCTGCTCTGACCTTCCAGCCTCTGTTGTCAAACTTCTGCTACAATCAATATTCAACAACACTGGGGGAGAAGTTGTAATCAACAAAGATGGCAAACGTGAGCTGTTGGGCACTCCGACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTTGGTGGGAATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAACTCTTTGAAAAAGCGGATGGGTGTCGTCCTACAATTTCCTGAAGGTGGTTTCCGAGCTCACACTAAAGGTGCTTCAGAAATAGTATTGGCTGCCTGTGACAAGGTGGTCAACTCGAGTGGTGATGTTGTTCCTTTAGATGAAGCTTCCATCAAACATCTCAATGTTATTATCAATCAATTTGCTGGTGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGCCAATGATCCTATTCCCGTTTCTGGTTATACCTGCATTGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCGGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACCGATGATGGCATAGCCATCGAGGGTCCAGATTTCAGAGAGAAGACTCAAGAGGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCTTCACCTCTCGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTCGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAACGATGCTCCTGCACTTCACGAAGCAGATATTGGACTAGCAATGGGCATCGCTGGAACTGAGGTGAGTTTAATATAG 2349 43.76 MERFLEENFGGIKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPAEVKAAGFHICGDELGSIVEGHDPKKFKYHGGVEGIAQKLCTSTTTGLSGDADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSRKLREGTQWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESSNNPSSFCSDLPASVVKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGNFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVVNSSGDVVPLDEASIKHLNVIINQFAGEALRTLCLAYMELENGFSANDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVSLI 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72773843 72778875 + Tan0007464.4 Tan03g1675 747179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1675 782 NCBIfam HAD-IC family P-type ATPase 205 375 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1675 782 NCBIfam HAD-IC family P-type ATPase 393 479 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Tan03g1675 782 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
Tan03g1675 782 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Tan03g1675 782 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 447 IPR023298 -
Tan03g1675 782 Pfam E1-E2 ATPase 236 432 - -
Tan03g1675 782 Gene3D - 318 504 - -
Tan03g1675 782 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Tan03g1675 782 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Tan03g1675 782 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Tan03g1675 782 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Tan03g1675 782 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Tan03g1675 782 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 780 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Tan03g1675 782 FunFam Calcium-transporting ATPase 463 657 - -
Tan03g1675 782 Gene3D - 238 317 - -
Tan03g1675 782 FunFam Calcium-transporting ATPase 17 77 - -
Tan03g1675 782 SFLD C1.7: P-type atpase like 435 780 - -
Tan03g1675 782 FunFam Calcium-transporting ATPase 216 336 - -
Tan03g1675 782 SUPERFAMILY HAD-like 441 779 IPR036412 -
Tan03g1675 782 PANTHER CATION TRANSPORTING ATPASE 77 780 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Tan03g1675 782 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Tan03g1675 782 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Tan03g1675 782 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Tan03g1675 782 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
Tan03g1675 782 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Tan03g1675 782 FunFam copper-transporting ATPase 1 isoform X2 652 697 - -
Tan03g1675 782 Gene3D - 508 649 IPR023299 GO:0000166(InterPro)
Tan03g1675 782 Gene3D - 17 77 - -
Tan03g1675 782 Pfam Cation transport ATPase (P-type) 513 591 - -
Tan03g1675 782 Pfam haloacid dehalogenase-like hydrolase 641 767 - -
Tan03g1675 782 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166(InterPro)
Tan03g1675 782 SFLD p-type atpase 435 780 IPR044492 -
Tan03g1675 782 Gene3D - 650 781 IPR023214 -
Tan03g1675 782 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1673 Tan-Chr3:72773843 Tan03g1675 Tan-Chr3:72773843 0.00E+00 dispersed
Tan03g1675 Tan-Chr3:72773843 Tan10g1637 Tan-Chr10:31065507 2.10E-268 dispersed
Tan03g1674 Tan-Chr3:72773843 Tan03g1675 Tan-Chr3:72773843 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1675 K01537 - csv:101212315 1461.43