Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1679 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTTAAACATCACGATAATCCTATGCCTGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAGAAAACTCCTTTCAACAAAATTAAAGCATATGGCTGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGCTCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATTACTAAATCCCAGGTCGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTGGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACACTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGGCAATGTGTTCTGA 921 43.97 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMPVSTVLQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLRKLLSTKLKHMAANGKLIKVKHKYRIAPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTLPSRSPIQKVLLQGNVF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72789948 72797537 - Tan0011143.2 Tan03g1679 747183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1679 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 FunFam Telomere repeat-binding factor 1 116 196 - -
Tan03g1679 306 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Tan03g1679 306 CDD SANT_TRF 6 57 - -
Tan03g1679 306 Gene3D - 2 59 - -
Tan03g1679 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tan03g1679 306 CDD H15 125 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan03g1679 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 Coils Coil 240 277 - -
Tan03g1679 306 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Tan03g1679 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tan03g1679 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Tan03g1679 306 SMART sant 4 59 IPR001005 -
Tan03g1679 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Tan03g1679 306 Gene3D - 118 194 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1679 K09422 - - csv:101202913 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0621 Tan-Chr1:5769829 Tan03g1679 Tan-Chr3:72789948 2.20E-59 dispersed
Tan03g1679 Tan-Chr3:72789948 Tan03g1681 Tan-Chr3:72789948 9.80E-73 dispersed
Tan03g1678 Tan-Chr3:72789948 Tan03g1679 Tan-Chr3:72789948 7.40E-145 tandem
Tan03g1679 Tan-Chr3:72789948 Tan03g1680 Tan-Chr3:72789948 8.00E-75 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g0622 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 58.4 1.2e-70 264.2
Tan01g0621 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 57.8 1.0e-69 261.2
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan04g2776 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 1.3e-69 260.8
Tan04g2777 . 1 265 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.2e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27008 PF00538 Linker_histone 4.10E-11 CL0123 Tan TF