Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1679 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTTAAACATCACGATAATCCTATGCCTGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAGAAAACTCCTTTCAACAAAATTAAAGCATATGGCTGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGCTCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATTACTAAATCCCAGGTCGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTGGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACACTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGGCAATGTGTTCTGA 921 43.97 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMPVSTVLQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLRKLLSTKLKHMAANGKLIKVKHKYRIAPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTLPSRSPIQKVLLQGNVF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72789948 72797537 - Tan0011143.2 Tan03g1679 747183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1679 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 FunFam Telomere repeat-binding factor 1 116 196 - -
Tan03g1679 306 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Tan03g1679 306 CDD SANT_TRF 6 57 - -
Tan03g1679 306 Gene3D - 2 59 - -
Tan03g1679 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tan03g1679 306 CDD H15 125 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan03g1679 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan03g1679 306 Coils Coil 240 277 - -
Tan03g1679 306 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Tan03g1679 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tan03g1679 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Tan03g1679 306 SMART sant 4 59 IPR001005 -
Tan03g1679 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Tan03g1679 306 Gene3D - 118 194 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0621 Tan-Chr1:5769829 Tan03g1679 Tan-Chr3:72789948 2.20E-59 dispersed
Tan03g1679 Tan-Chr3:72789948 Tan03g1681 Tan-Chr3:72789948 9.80E-73 dispersed
Tan03g1678 Tan-Chr3:72789948 Tan03g1679 Tan-Chr3:72789948 7.40E-145 tandem
Tan03g1679 Tan-Chr3:72789948 Tan03g1680 Tan-Chr3:72789948 8.00E-75 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27008 PF00538 Linker_histone 4.10E-11 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1679 K09422 - csv:101202913 475.322